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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattctaatttcgttattatattgaaacaaacatatcttacataatctttactaacataactcttctaccaactttggcttttcag

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattct---aatttcgttattatattgaaaca----aacatatcttacataatctttactaacataactcttctaccaactttggcttttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | |||| ||||| ||||| || ||||| ||||| ||||| || ||| |  ||     | |  | |    |  || |  |     |||  | || |   | |    ||||||  ||  || |    |  |||    ||||||
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag

upper sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattct---aatttcgttattatattgaaaca----aacatatcttacataatctttactaacataactcttctaccaactttggcttttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | | || ||||| ||||| || ||||| ||||| ||||| || ||| |  ||     | |  | |    |  || |  |     |||  | || |   | |    ||||||  ||  || |    |  |||    ||||||
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562742|gb|BG550962.1|BG550962
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAANTGGTGGGTGTGGTATTACTGGGATTTGTCCAGTGGCAT
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAA-TGGTGGGTGTGGTATTACTGG-ATTTGTCCAGTGGCAT
EST: gi|151406392|gb|EV276207.1|EV276207
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|16346225|gb|BI971820.1|BI971820
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|19938200|gb|BQ081608.1|BQ081608
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|151401523|gb|EV271337.1|EV271337
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|14205882|gb|BG839560.1|BG839560
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|16995911|gb|BM085283.1|BM085283
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|16343639|gb|BI969234.1|BI969234
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|15812818|gb|BI785093.1|BI785093
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|192328785|gb|FK022557.1|FK022557
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|51344418|gb|CO985151.1|CO985151
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG