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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaacctttatcagcctttctgactgagctggtggtgacttaaaatgatgtttacatctttactgtaatattattttctaatccacattctgtatcatttttacag

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 22
GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac-ctttatcagcctttctgactgagctggtggtgacttaaaatgatgtttacatctttactgtaatattattttctaatccacattctgtatcatttttacag
||||||||||| ||||||||||| ||||||||||| || ||||| || |||  ||| |||||||||||||| ||| || | ||||||||||       ||| | | |    ||   |       |  |   | | | | |  ||||  |  |||         || |  ||  |  | ||     | ||  |      
GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTTGCTCCTTATCATTCCGATCGGTTCTTATTGTCACCgtaagttcttgttttgtaaacaaaact--ttatttcctttctccttcagagtaagttttatgttctta----ggacctaataactggtttagatgtgacaccaact------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530135|gb|EH258269.1|EH258269
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC                         GACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
EST: gi|31462296|gb|CD404324.1|CD404324
EST:     ATCGCTTCCTACTATCACC                         GACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
genomic: ATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
EST: gi|10847592|gb|BF070244.1|BF070244
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC                         GACAGCACTTGCTGGATTA-TTACCATGTTGCATG
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATG
EST: gi|10237756|gb|BE806644.1|BE806644
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTCCTATCACC                         GACAGCACTTGCTGGATTAATTACCCATGTT-CATGCTTGCCTAGACATGA
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACC-ATGTTGCATGCTTGCCTAGACATGA
EST: gi|10234169|gb|BE803057.1|BE803057
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTGCTACTATCACC                         GACAGCACTTGCTGGATTAATTACCATGTAGCATGCTTGCCTAGACATGAA
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
EST: gi|9440032|gb|BE440543.1|BE440543
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC                         GACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
EST: gi|120492692|gb|EH220859.1|EH220859
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC                         GACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
EST: gi|120530034|gb|EH258168.1|EH258168
EST:     GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC                         GACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA
genomic: GGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACCgtaagcaaac ... atttttacagGACAGCACTTGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAA