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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattactctttaccttcttgttgctttgttgaagtgcctcttaaactaaatatgcattgagcag

Basic information

species Glycine max
transcript GLYMA06G16110.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 22
TTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaa--cattactctttaccttcttgttgctttgttgaagtgcctc----ttaaactaaatatgcattgagcag
||||||||| | || |  || ||||| |||||||||||||||||||||||||||||||  |||||||| || || || ||||||||||||||||| |||||||    | ||  ||||  | |   | |    ||       ||| |     | |  |||| | ||| |  ||   
TTTGAGAAGATCTATTTCCCTTATCTACTGATTAGCAAGAAGAGATATGCTGGTTTGTACTGGACAAATCCTGAGAAATTTGACAAAATGGACACGAAAGgtattttcttttgtcttgtcttagatatcatcttaccttcttgctttaacatgattctaactttgcttatag---

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G115245_T01 (Zea mays), 5'ss of exon 6
TTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattactc-tttaccttcttgttgctttgttgaagtgcctcttaaactaa-atatgcattgagcag----------------------------------
||||||||||| || | ||| || || || || |||||||||||||||||||||||||  ||||| || || || || ||||||||||||||  | |||||||  | ||  |  |||| ||   |   || |     |  | | |   |     | | |    ||    |                                   
TTTGAGAAGGTCTATTTTCCTTACCTTCTAATCAGCAAGAAGAGATATGCTGGTTTGTACTGGACGAATCCTGAGAAATTTGACAAAATGGATGCAAAAGgtattccttttttgtttagctgtgtaaagcataaactattttcattggatgtggacacagatgttagttatccttcctttcaaatgtcttctatcttgcgtgcag

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 22
lower sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 22
TTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattactctttaccttcttgttgctttgttgaagtgcctcttaaacta-aatat----gcattgagcag
||||| ||||| || |  |||||||| || |||| ||||||||| |||||||||||| | |||||||| ||  |  | ||||||||||||||||| |||||||||  ||  |  ||          |   || || |  | |    |||| |  |||||    |  ||  ||||
TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag