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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAACTGGGAGGTTTCAATTTAAGGAAATTGAGGGCTCCGAAGAGATTCTTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGCCTgtaagtattcatgatagcttcatctcttagttgttaaccgaatgtggtatttgtctctactgcttgttggtggttgaaaagtcgaaagaaatgaaaagatgctaaaagaagttgaaacaataaattaaattgaaatgtccattaggaagtggctaatgactgatctttttgctcttggtcttgcag

Basic information

species Glycine max
transcript GLYMA06G13280.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13280.2 (Glycine max), 5'ss of exon 22
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 22
TGAAACTGGGAGGTTTCAATTTAAGGAAATTGAGGGCTCCGAAGAGATTCTTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGCCTgtaagtattcatgatagcttcatctcttagttgttaaccgaatgtggtatttgtctctactgcttgttggtggttgaaaagtcgaaagaaatgaaaagatgctaaaagaagttgaaacaataaattaaattgaaatgtccattaggaagtggctaatgactgatctttttgctcttggtcttgcag
||  | ||| | |||||| || |||||| ||||||||  | | ||| |  ||||||||||||| ||| | || ||||||||||||||||||||||||   ||||||| ||   ||| ||||||| |          ||| ||||   | ||  ||   | |   || |  ||||| |    ||        |  |||  | |                                                                                    
TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactct--ataacttcatccc----------acc-aatgacttgttcctccaaattttctgattttggttaatggttcttgtactcttcaaacttccag----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789402|gb|BG651993.1|BG651993
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGCCT                         ACAATTGCAGAGAAGTTGGGTATTGAGCGAGACAACAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGCCTgtaagtattc ... ggtcttgcagACAATTGCAGAGAAGTTGGGTATTGAGCGAGACAACAGGTCAAACTTCAAG