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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAACTGGGAGGTTTCAATTTAAGGAAATTGAGGGCTCCGAGGAGATTATTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattcataatagcttcatctctttatgtttacagaatgtggtagttgagaagaagttgcaacaataaattgaattgaaatgtccattattaggaagtggctaatgattgatatttctgctcttggttttgcag

Basic information

species Glycine max
transcript GLYMA04G41540.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 22
TGAAACTGGGAGGTTTCAATTTAAGGAAATTGAGGGCTCCGAGGAGATTATTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattcataatagcttcatctctttatgtttacagaatgtggtagttgagaagaagttgcaacaataaattgaattgaaatgtccattattaggaagtggctaatgattgatatttctgctcttggttttgcag
||  | ||| | |||||| || |||||| ||||||||  | ||||| | |||||||||||||| ||| | || ||||||||||||||||||||||||   ||||||| ||   ||| ||||||| |   |   | ||    |     |  |     ||  |||    |||   |    ||| | | | ||   ||                                           
TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactct--ataacttcatcccaccaa--tgacttgttcctccaaattttctgattttg-gttaatggttc---ttgtactcttcaaacttccag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330159|gb|GR839712.1|GR839712
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|58016221|gb|CX702963.1|CX702963
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254341888|gb|GR853025.1|GR853025
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254333030|gb|GR850280.1|GR850280
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254330158|gb|GR839711.1|GR839711
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254323784|gb|GR836123.1|GR836123
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254343182|gb|GR859344.1|GR859344
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|13481529|gb|BG510872.1|BG510872
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|26058426|gb|CA801340.1|CA801340
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|151412479|gb|EV282291.1|EV282291
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|58015885|gb|CX702627.1|CX702627
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254348732|gb|GR852411.1|GR852411
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCGTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254323783|gb|GR836122.1|GR836122
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254341887|gb|GR853024.1|GR853024
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|51343495|gb|CO984228.1|CO984228
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|254315763|gb|GR825572.1|GR825572
EST:     TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGGAAGTTGGG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAG-AAGTTGGG
EST: gi|22930881|gb|BU548020.1|BU548020
EST:     TTGAGGCTGACCTAGTNNNACTGGCCATGGGATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: TTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
EST: gi|208321061|gb|GE119086.1|GE119086
EST:     ATTCCTTGGCCCTGAGTCT                         ACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG
genomic: ATTCCTTGGCCCTGAGTCTgtaagtattc ... ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAG