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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGACACAGATGAATGATGAAAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACTAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattggtgtacattacttcaattttacctttgaatatcagtatgaatgttaatataccatattcttcctttattttgtggcaatttgaaacacaagtattttatgacctcgaggcattgcagtttttttaacttttttatgctggatttgtcatttgtcatacag

Basic information

species Glycine max
transcript GLYMA01G35950.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 20
AGGGACACAGATGAATGATGAAAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACTAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattggt-gtacattacttcaattttacctttgaatatcagtatgaatgttaatataccatattcttcctttattttgtggcaatttgaaacacaagtattttatgacctcgaggcattgcagtttttttaacttttttatgctggatttgtcatttgtcatacag
 || ||  | ||||||||||| |||||||| |||||| | || || ||| |  | ||||||||||| || ||||||| |||||||  |||||| || ||||||| |   | |     || | |   || ||        || | ||  ||  | | |||  |     | ||||    | |   |||    || | || ||||  | |  ||                                                        
CGGAACTAATATGAATGATGAGAGTTCAAGGTCTCATTTAATTCTTTCAGTCATTATTGAAAGTACAAATCTTCAAACCCAATCATATGCAAGAGGCAAGgtatggacagaatgaagctgcgaacataactc-------caatttggttg--agtctac--tggcaatactttcgactataataat---gaataaaaatattgaacgttctgtc-----------------------------------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 22
lower sequence: AT5G65930.2 (Arabidopsis thaliana), 5'ss of exon 19
AGGGACACAGATGAATGATGAAAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACTAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattggtgtacattacttcaattttacctttgaat-atcagtatgaatgttaatataccatattcttcctttattttgtggcaatttgaaacacaagtattttatgacctcgaggcattgcagtttttttaacttttttatgctggatttgtcatttgtcatacag
 || ||| | |||||||| ||||| ||||||||||| |||||| ||||| |||| |||||||||| | | ||||||| ||| ||  |||| ||||| |||||       | || ||  |   |||     |||| | || |  ||   |   |  ||    ||   ||     |||||  ||       ||| |  ||| | ||  ||                                                           
TGGAACAAATATGAATGAAGAAAGCTCAAGATCTCACCTCATATTATCAGTTGTTATTGAAAGTATTGATCTTCAAACCCAGTCTGCTGCGAGGGGCAAGgtgacaaaattcactatgtt--tttctttattgactcattatcatttttcacaggatttagtagcatttagggattttaagg-------aaataggagtttctttagat----------------------------------------------------------

upper sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 21
AGGGACACAGATGAATGATGAAAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACTAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattggtgtacattacttcaattttacctttgaatatcagtatgaatgttaatataccatattcttcctttattttgtggcaatttgaaacacaagtattttatgacctcgaggcattgcagtttttttaacttttttatgctggatttgtcatttgtcatacag
 || || || |||||||| |||||||||||||||||| | || || |||||| ||||||||||||| || ||||||| |||||||  ||| || |||||||||||  | |  || ||||  |          | ||||     ||   |||||| | |  |   || || | |  || || |   |  | ||||     ||  ||    | ||                                                     
TGGCACTCAAATGAATGAAGAAAGTTCAAGATCTCATTTGATTCTTTCAATTATCATTGAAAGTACCAATCTTCAAACCCAATCAGTTGCCAGAGGAAAGgtatta-tctttatcacttgga----------gcatattctcttgg--gttaat-ttctttgacctcccctgagattttgcc---taaatacacttagtttccattggtttgaaatt-------------------------------------------------