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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatccaattgcaatatagaatatatgacaattactgatacatgcagccatgttaaacctatccctttgagtatagcttatcacagtaaaatcttttggattctgaatatttttttatcttctatgtag

Basic information

species Glycine max
transcript GLYMA01G01230.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01230.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 20
GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgta--------aagatccaattgcaatata---gaatatatgacaattactgatacatgcagccatgttaaacctatccctttgagtatagcttatcacagt-aaaatcttttggattctgaatatttttttatcttctatgtag----------------
|| ||||| ||||||||||||||||| || || |||| ||||||||||        | ||    ||||| || ||      | || ||    | || |||  | |||  |    ||    ||   ||  |    |  | |   || | | ||   |||   |||  |   ||||  | |  |  ||||                  
GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAGgtatgattcgtatgactatattgctatctactcacttgtaggagggattcttatat-tacagaaacaaaaacaaaatttattcaatggaatatcactgcaattagaaatgtttttgttcaaatctttttcctgttctgaatgtgttgcttgccatgtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025193|gb|CX711934.1|CX711934
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|9902990|gb|BE611958.1|BE611958
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|58024062|gb|CX710803.1|CX710803
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|254321698|gb|GR825015.1|GR825015
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|6567219|gb|AW234830.1|AW234830
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|193674227|gb|FK619433.1|FK619433
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT