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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttattcattttatgttacactcttaccttataatttggcctcatctttattaaatatctgtatctttatttgataccctgtag

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231873|gb|BE800761.1|BE800761
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTNTGGTGCTCGAACCATNT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|9984323|gb|BE658431.1|BE658431
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|6482302|gb|AW201571.1|AW201571
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|6724335|gb|AW308734.1|AW308734
EST:     GATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: GATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|8286445|gb|BE024013.1|BE024013
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|21479843|gb|BQ576526.1|BQ576526
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|22928570|gb|BU545709.1|BU545709
EST:     CAAGGGCAGCTGTCNTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|21676461|gb|BQ628812.1|BQ628812
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|5761162|gb|AI966525.1|AI966525
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGCAAAAGCGGCCACTTTGGTGCTCGTAACCATT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCG-AACCATT
EST: gi|192324238|gb|FK018209.1|FK018209
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|208299583|gb|GE097122.1|GE097122
EST:     GCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAAGCGGTCACTTTGGTGCTCGAACCATT
genomic: GCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGT-AAAAGCGGTCACTTTGGTGCTCGAACCATT
EST: gi|208296976|gb|GE096572.1|GE096572
EST:     GCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: GCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|21993972|gb|BQ785500.1|BQ785500
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
EST: gi|6481851|gb|AW201122.1|AW201122
EST:     CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG                         CTGAGAGGTTNTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT
genomic: CAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttatt ... taccctgtagCTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAGgtaagttattcattttatgttacactcttaccttataatttggcctcatctttattaaatatctgtatctttatttgataccctgtag

- - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG