1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GATAACAATGTGCAACATGTCGTTGAGGTTGATTCTGCACGAGTTGCAGCAGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtattattgtgttggatcatggtcctttgattgataacaacatttacctctgcagctgagattgtttgatcatatgattacttttttttttttttg...
species | Glycine max |
transcript | GLYMA19G38150.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATG TCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGCATTAAATGTGGTEST: gi|208187772|gb|GD980902.1|GD980902
genomic: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtatta ... ttttttgcagTCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGT
EST: GAGGAAGATGTTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATG TCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGAEST: gi|207787798|gb|GD761540.1|GD761540
genomic: GAGGAAGATG-TGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtatta ... ttttttgcagTCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGA
EST: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATG TCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGAEST: gi|31473466|gb|CD415479.1|CD415479
genomic: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtatta ... ttttttgcagTCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGA
EST: GTGAGGATCTTCTTGAGCAGTTAGATG TCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGAEST: gi|207791882|gb|GD765917.1|GD765917
genomic: GTGAGGATCTTCTTGAGCAGTTAGATGgtgagtatta ... ttttttgcagTCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGA
EST: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATG TCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGAEST: gi|208157493|gb|GD953673.1|GD953673
genomic: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtatta ... ttttttgcagTCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGA
EST: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATG TCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGA
genomic: AGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtatta ... ttttttgcagTCACGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAACAATGTGCAACATGTCGTTGAGGTTGATTCTGCACGAGTTGCAGCAGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGgtgagtattattgtgttggatcatggtcctttgattgataacaacatttacctctgcagctgagattgtttgatcatatgattacttttttttttttttg
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG