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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCTTTGATATCACCCAAATTCCTGATGTTTATGATTCATGCAAgtaagtcatctcttttatttcttgttttgatgatacgtagctcatttccaactctacaataatatttgtgcaacattccagttatcggtatagattatga...

Basic information

species Glycine max
transcript GLYMA19G02260.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 21
lower sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 24
ACGCTTTGATATCACCCAAATTCCTGATGTTTATGATTCATGCAAgtaagtcatctct--tttatttcttgttttgatgatacgtagctc--atttccaactctacaataatatttgtgcaacattccagttatcggtatagattatga
 || ||||| ||||| || ||||| |||||||| |||||||||||||||||  | | |  | ||| ||| | |||    | || |||||    || |    | |  |||||     ||   |  ||    | | | |            
CCGATTTGACATCACACAGATTCCGGATGTTTACGATTCATGCAAgtaagttgtttttagtgtatctctagattt----acacctagctttagttactcgtttttgaataag--ccgtaatatgttattctcaccag------------

upper sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 21
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 5'ss of exon 24
ACGCTTTGATATCACCCAAATTCCTGATGTTTATGATTCATGCAAgtaagtcatctctttta-tttcttgttttgatgatacgtagctcatttccaactctacaataatatttgtg-caacattcc--agttatcg-gtatagattatga-------
 || ||||| || || || |||||||||||||| ||||||||||||||||  || | ||| | | | || | ||||||||   |||    | || |  |  |   |    || ||  |  |||||   |  ||||| | ||   || | |       
GCGGTTTGACATTACGCAGATTCCTGATGTTTACGATTCATGCAAgtaagctatgtgtttaagtctattatgttgatgat--ttagtgtgtatctagattgatccttgctttagtttctccattcttaatatatcgtgaatgtgttgtcaacaccag

upper sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 23
ACGCTTTGATATCACCCAAATTCCTGATGTTTATGATTCATGCAAgtaagtcatctcttttatttcttgttttgatgatacgtagctcatttccaactctacaataatatttgtgcaacattccagttatcggta-tagattatga
 || |||||||| || |||||||| ||||||||||| || |||||||||||||  |  || | || |    ||| |   |  |           || |  |    || ||      || ||    ||| |  | | || | |||| 
TCGATTTGATATAACACAAATTCCAGATGTTTATGACTCTTGCAAgtaagtcacatagttgaattttaccattggttgcaaattatctgaaagtaattacatctcaa-atcatactaatatggtggttctgagcagtaaactatgg