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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGTTATGCATTTCTAACATCTCTGGTCAGgtatatgtgttcctgtaccccccatcccacatccctcaaaaaactgtcgctttgattatcgtaagttatttgctttttctttattttgacatgctagggaagtagcatgctttgtgcatgagtacaggatgacaactttgatgtttggtgcagttgacaatattcatttagtttctttgttgacacctcag

Basic information

species Glycine max
transcript GLYMA17G04890.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 21
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 20
GTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGTTATGCATTTCTAACATCTCTGGTCAGgtatatgtgttcctgtaccccccatcccacatccctcaaaaaactgtcgctttgattatcgtaagttatttgctttttctttattttgacatgctagggaagtagcatgctttgtgcatgagtacaggatgacaactttgatgtttggtgcagttgacaatattcatttagtttctttgttgacacctcag
|  || || | |  |||||||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| |      |  |||   |  ||  ||||  ||     |   | | |  |||| |||      |  || | ||    | ||| ||| || | | | | || |   ||     |   || | |  | |||   ||| |  |  || |    ||  | |                                
GGATTCTTCTCTGCATGGAGGGATTTAAAGCTGGAATACATATTGCTTATGTTCTTGGAATGGATACAATGCGATATGCATTTCTAACATCGCTTGTCAGgtaaa------ctcgtaaaacttatttcacactcccttttatgtt-tagtgttgaatat-----atatttaggttgcattgtatattggca-gtttgtgtagaatattgtgccattgctgcgcaatgcatgttgactatttttctttgaattgtccatag-------------------------------

upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 21
GTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGTTATGCATTTCTAACATCTCTGGTCAGgtatatgtgttcctgtaccccccatcccacatccctcaaaaaact----gtcgctttgattat--cgtaagttatttgctttttctttattttgacatgctagggaagtagcatgctttgtgcatgagtacaggatgacaactttgatgtttggtgcagttgacaatattcatttagtttctttgttgacacctcag
| ||| || | |  ||||| ||||||| ||||||||| || |||||   |||  ||||||||||||||||||| ||||| ||||| ||||| || |||||||| |     |  | ||            ||      | |||| |    | ||| |  |  |   |  ||   | || ||| || |||  ||||   ||                                                                                                  
GGGTTCTTCTCTGTATGGAAGGATTTAGAGCTGGCATTCACATTACACATGTTATTGGAATGGATACCATGCGCTATGCTTTTCTGACATCACTAGTCAGgtaaaatcccttttttattttttgataggcaaaggggagaaaaattaacgccgcctgcaagaggacacaataaaattccttgttatttggtttgttttgt-------------------------------------------------------------------------------------------------

upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 21
lower sequence: PP1S19_33V6.1 (Physcomitrella patens), 5'ss of exon 14
GTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGTTATGCATTTCTAACATCTCTGGTCAGgtatatgtgttcctgtaccccccatcccacatccctcaaaaaactgtcgctttgattatcgtaagttatttgctttttctttattttgacatgctagggaagtagcatgctttgtgcatgagtacaggatgacaactttgatgtttggtgcagttgacaatattcatttagtttctttgttgacacctcag
                                                      | |||||||| |||||||||||||||||||| || ||  | || ||||   ||| |   | |      |      | |   | | |   |       | | |   ||| ||   ||||    |    | ||    |||||  | || ||   |    |||     || |    | |   |   |||  |                                                
------------------------------------------------------TGGGAATGGAGACCATGCGTTATGCATTTCTGACGTCGTTAGTGAGGTTGGTGTCTATTTTTGGAGGTCTCGTGGCGTTGTTGATAGCGCCAATTGGTGGgt--acgtgagggttttgaagctgtaatgttgcagcatgcgggcgaggt--taatagttgcattcgattgtgtgctt-tactcttgcag------------------------------------------------