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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatgagtggacttttacctttcccgattgtgtcaagattctgtgatggtttttctgcccaagtgaatgatcttacaatcatgctatgtgcacaca...

Basic information

species Glycine max
transcript GLYMA15G13380.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324397|gb|GR833822.1|GR833822
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|254324398|gb|GR833823.1|GR833823
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|22929445|gb|BU546584.1|BU546584
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|58021487|gb|CX708228.1|CX708228
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|8401463|gb|BE057159.1|BE057159
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|12689756|gb|BG156092.1|BG156092
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|31456933|gb|CD398961.1|CD398961
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|17153054|gb|BM142987.1|BM142987
EST:     CTGGGTACAAATGGACATAGCTGGAGAGTATCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: CTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|57575891|gb|CX548862.1|CX548862
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|21889070|gb|BQ742283.1|BQ742283
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|58025332|gb|CX712073.1|CX712073
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|19271184|gb|BM887440.1|BM887440
EST:     AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: gi|6134477|gb|AW132870.1|AW132870
EST:     AGGCAATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT                         TTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACAGTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatgagtggacttttacctttcccgattgtgtcaagattctgtgatggtttttctgcccaagtgaatgatcttacaatcatgctatgtgcacaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA