Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGCTTTATGGGTATACGCCATTTCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgctatccttcctaacttattatacatttgttgcttacaggacgttgctttgctacagctaattttcaattttgatctgagttatgaaattcacc...

Basic information

species Glycine max
transcript GLYMA15G04850.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 21
TGAAATGCTTTATGGGTATACGCCATTTCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgctatccttcctaacttattatacatttgttgcttacaggacgttgctttgctacagctaattttcaattttgatctgagttatgaaattcacc-----------
||||||||||||||| ||||| |||||| |||| |||||||| ||||| |||||||| || ||||||||||| ||||||||||||||   ||||| | |||||||  ||   || | ||  || | ||   ||| |   ||        ||  ||  || |   |||||   |    | |  ||   | ||| ||||              
TGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGGCAAAAGACATTTGCCAACATTCTTCACAAAGATCTTAAATTTCCATCAAGTATATCGgtgagatct--tctacatatgttgtcatttttttttccttt--------ttatttcacttccagtaattcatatgaatcaaatgccct-tgacattctttcatcttaaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193639469|gb|FK585710.1|FK585710
EST:     ATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: ATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|208218257|gb|GE019201.1|GE019201
EST:     CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCCGGGAAGGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|193357124|gb|FK322350.1|FK322350
EST:     CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|207734916|gb|GD712517.1|GD712517
EST:     CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|193513351|gb|FK471459.1|FK471459
EST:     ATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: ATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|207792345|gb|GD764251.1|GD764251
EST:     AAGGATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: AAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|193672520|gb|FK618540.1|FK618540
EST:     CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|208245985|gb|GE050695.1|GE050695
EST:     AAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: AAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
EST: gi|207797627|gb|GD769451.1|GD769451
EST:     CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCG                         GTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA
genomic: CATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgcta ... attgatgcagGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAATGCTTTATGGGTATACGCCATTTCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGgtgagtgctatccttcctaacttattatacatttgttgcttacaggacgttgctttgctacagctaattttcaattttgatctgagttatgaaattcacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcct