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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGTGCTGTGGTGATTTGAGAGAACTGAAGGGTGGTCATTACCACAGTATTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATGgtaagaaagagacttaaggcaccaactatgtacaaaatattcactggttaccggattctagttttttatgttatttaaataaattaccatgacatacag

Basic information

species Glycine max
transcript GLYMA15G04830.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04830.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 22
TCCGTGCTGTGGTGATTTGAGAGAACTGAAGGGTGGTCATTACCACAGTATTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATGgtaagaa----agag-act-taaggcaccaactatg---tacaa------aatattcactggttaccggattctagttttttatgttatttaaataaattaccatgacatacag----------
||| || ||||| |||||||| ||||||||  | ||||| |||||||  ||||| ||||| || || || |||||||||||||||||  | || ||  |||||||||    |||| ||| |  |  | ||  ||||   | |||      || ||| | || ||     |  | | | ||  | |||   |||     ||   |  | | | |           
TCCTTGTTGTGGGGATTTGAGGGAACTGAATAGCGGTCACTACCACAAGATTGTGGAGATCACGGAGAACGCAGGGAAATGTCTTCTGGATGAGTATGTGgtaagaatattagagtactatgtgatatcatttatggggttcaatcttgtaaaatttagtgttttgaacaaacaaatcttccaagtttcctaacacttttgttacaaaaaaaaaaaaaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315490|gb|FK009236.1|FK009236
EST:     TTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATG                         GTCGACGAACCATCTTGTTCAACACCAAGAAAGAGACTCTTCAATTTATCT
genomic: TTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATGgtaagaaaga ... tgacatacagGTCGACGAACCATCTTGTTCAACACCAAGAAAGAGACTCTTCAATTTATCT
EST: gi|151398281|gb|EV267865.1|EV267865
EST:     TTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATG                         GTCGACGAACCATCTTGTTCAACACCAAGAAAGAGACTCTTCAATTTATCT
genomic: TTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATGgtaagaaaga ... tgacatacagGTCGACGAACCATCTTGTTCAACACCAAGAAAGAGACTCTTCAATTTATCT