1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ATCCAGAAACAATCCTCCCTTCTCTCAAAATTGACACGCCAATTGAGTATTCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaagctgctttcttactcatttacatatttgtcagatgggtgagtcatcaatattagttaaacatattgtgcacctcttttttgtttttcaag...
species | Glycine max |
transcript | GLYMA12G37100.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|58018015|gb|CX704757.1|CX704757
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|18038693|gb|BM306987.1|BM306987
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|209705823|gb|BW675928.1|BW675928
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|151401960|gb|EV271773.1|EV271773
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|58021278|gb|CX708020.1|CX708020
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|51336285|gb|CO980151.1|CO980151
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|37995741|gb|CF807330.1|CF807330
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|58024379|gb|CX711120.1|CX711120
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTEST: gi|254322389|gb|GR837803.1|GR837803
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaa ... tgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAGAAACAATCCTCCCTTCTCTCAAAATTGACACGCCAATTGAGTATTCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtgtaagctgctttcttactcatttacatatttgtcagatgggtgagtcatcaatattagttaaacatattgtgcacctcttttttgtttttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC