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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaagctctcctcctccttattttctaatttccactgtttttatggtcacccattttcttttaccttatctatag

Basic information

species Glycine max
transcript GLYMA12G13410.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 21
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctt-tctctaagctctcctcctccttattttctaatttccactgtt-tttatggtcacccattttcttttaccttatctatag------------------
 |||||| | || |||||||| || ||||||||| |||| ||||| ||||||||||||||||| ||||| || ||||| ||  |    | ||| || |||||||| |  |   |   |  |  ||||  | |   | |  |     ||||| |   ||||     ||  |   |     |||  | |                   
ATTGGGTTTCATTGGTGCTGGTACAAACAATGCTAGAATAGCTGGTATGCTTCGCAATCTTTCAAGTTACTATTACAAAGAAGCTGCGCATCTGTTTTGTgtaagttaataaatccacaatgatccttttaaacctgtgctccattctgttgtacctggttgtatataatgcgtacatatattgacaaaattttgcatgtattcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G155384_T02 (Zea mays), 5'ss of exon 21
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaa-------gctctcctcctccttattttctaat-----ttccactgttt--ttatgg---tcacccatt---ttcttttaccttatctatag----
 |||||| |||| |||||||| || ||||||||  |||| ||||||||||||||||||||||| |||||||||||||| ||  |    | ||| || ||||||||  |     ||         | |      | | || | |||||     ||||   ||||  ||||      || |||||      ||||| | | |   | |    
ATTGGGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCTGCTCATCTGTTTTGTgtaagtatatatcaacgacgatattttggcatccttcatgtactaataatggttccttggtttcgttataagttccatccattgatccgttttatcgtgttcgtcgtcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G155384_T01 (Zea mays), 5'ss of exon 21
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaa-------gctctcctcctccttattttctaat-----ttccactgttt--ttatgg---tcacccatt---ttcttttaccttatctatag---------
    ||| |||| |||||||| || ||||||||  |||| ||||||||||||||||||||||| |||||||||||||| ||  |    | ||| || ||||||||  |     ||         | |      | | || | |||||     ||||   ||||  ||||      || |||||      ||||| | | |   | |         
----GGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCTGCTCATCTGTTTTGTGTAAgtatatatcaacgacgatattttggcatccttcatgtactaataatggttccttggtttcgttataagttccatccattgatccgttttatcgtgttcgtcgtcaggttag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM5G816609_T01 (Zea mays), 5'ss of exon 7
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctt---tctctaa-gctctcct------cctccttattttctaatttcc--actgtttttatggtcacccattttcttttaccttatc-tatag--------
 |||||| |||| |||||||| || ||||||||  |||| |||| |||||||||||||||||| |||||||||||||| ||  |    | ||| || ||||||||  |   ||  ||| | ||   |      | || |    || |  || |   | ||||||| | ||  |    |||  || |  ||||  | ||         
ATTGGGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGCCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatagatcgataatgatcatttggcatccttcatggacttttggttccttgattgttttt-tagtttcatgctttgattaattttattgtgtacatcatcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 19
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaagctctcctcctccttattttctaatttccactgttt----ttatggtca-cccattttcttttaccttatctatag-----
| | ||  ||||||| |||||||| ||||||||  | || |||||||||||| | ||||| || || ||||| ||||||||| |||||||||| |||||||||| | || | | |  |||  |     || |  |  |||   ||| ||||    ||||| |   |   || || ||  | | |   | |      
CCTTGGATTGATAGGCGCTGGAACCAACAATGCAAGGATAGCTGGCATGCTTAGAAATCTCTCCAGCTATTATTACAAGGATGCCAGCCTTCTTTTCTGTgtaa-cgttttatgatttctttttaagttt-tcatggaataaacacggtttctacttatgataggcttgttctcattgtcttaagtcacaatgcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 21
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaag----cttt------ctctaagctctcc---tcctccttattt--tctaatttccactgtttttatggtcacccattttctttta-ccttatctatag
||||||| |||||||||| || || |||||||||||||||||||||||||| || |||||||| || ||||||||||| ||  | |||||||| ||||||||||     ||||      || |||  ||||    |  || ||  ||  || |||     || | | | |   |||| || || ||||  ||   | |  ||
CTTGGGTTTGATAGGTGCGGGTACCAACAATGCTCGAATTGCTGGCATGCTCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattcttttattacctttaaattctctagattttctttcattcatccaatgggttctatatattttcacaccaatattgttttggccacttgtgcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: PP1S3_553V6.1 (Physcomitrella patens), 5'ss of exon 21
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttct---ctaagctc----tcctcctccttatttt-ctaatttccactgtt-----tttatggtcacccattttcttttaccttatctatag
 ||||| || ||||| || ||||| || || || ||||||||||| |||||||||||||| ||||| || || ||||||||  | ||||| || || |||||| ||||  |   || |  ||    | |  ||  ||||| |  || ||| |  | ||     |||| ||           | | |   | |  |  ||
TTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAATTGCTGGAATGCTTCGCAATCTCTCTAGCTACTATTACAAGGACCCAAGCCTACTCTTTTGTgtatgcttctttaccttaattcattatgcatctaattattctgttactttgcgttattctttgtttagggctggatgacaacatgttgatgacatgcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: PP1S414_22V6.1 (Physcomitrella patens), 5'ss of exon 21
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaagctc---tcctcctccttattttctaatttccactgtttt-tatggtcacccattttcttttaccttatctatag------------
 ||||| || || || ||||| || || ||||| ||||||||||||||||||||||| |||||||| || || ||||||||  | |||||||||||||||||| || |   |          | || ||| | ||||| | ||| |  | |  |    |  |     |   |  | | |||||  |||              
TTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAATTGCTGGCATGCTTCGCAACCTTTCTAGCTACTATTACAAGGACCCAAGCCTTCTATTCTGTgtacgcctctaccctttctgcattctgctcttaattttttcattcctgcagaataactttctttttgagactactattccttacatattaatgtcgttgcag

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: EFJ26022 (Selaginella moellendorffii), 5'ss of exon 20
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaagctctcctcctccttattttctaatttccactgtttttatggtcacccattttcttttaccttatctatag
  | || || || || || ||||| |||||||| || ||||| || |||||||| |   | || || ||||||||||||||| |||||||||| ||||| ||||| ||  |||    | |  | ||  || |||  |  ||| ||   |  || ||      || | ||| | ||           
TCTTGGACTTATTGGCGCCGGAACAAACAATGCGCGTATTGCGGGAATGCTTCGAAGCTTGTCCAGCTATTACTACAAGGATCCCAGCCTTCTGTTCTGCgtaagtttgatctctcttgtttttcttttt-tttcttcgttttcatcttagttttg-----tcaatctctgtcacag---------

upper sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 21
lower sequence: EFJ14427 (Selaginella moellendorffii), 5'ss of exon 20
CTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttctctaagctctcctcctccttattttctaatttccactgtttttatggtcacccattttcttttaccttatctatag
  | || || || || |||||||| |||||||| || ||||| || |||||||| |   | || || ||||||||||||||| |||||||||| ||||| ||||| ||  |||    | |  | ||  || |||  |  ||| ||   |  || ||      || | ||| | ||           
TCTTGGACTTATTGGCGCTGGAACAAACAATGCGCGTATTGCGGGAATGCTTCGAAGCTTGTCCAGCTATTACTACAAGGATCCCAGCCTTCTGTTCTGCgtaagtttgatctctcttgtttttcttttt-tttcttcgttttcatcttagttttg-----tcaatctctgtcacag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725422|gb|BW658286.1|BW658286
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|6666256|gb|AW277715.1|AW277715
EST:     ACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: ACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|21255610|gb|BQ452498.1|BQ452498
EST:     CTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: CTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|21255674|gb|BQ452562.1|BQ452562
EST:     CTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: CTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|9564564|gb|BE474073.1|BE474073
EST:     TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|254324185|gb|GR836310.1|GR836310
EST:     TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|208149487|gb|GD948933.1|GD948933
EST:     TTCGCAATCTTTCTGGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|254324186|gb|GR836311.1|GR836311
EST:     TTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGAGCTTATTAACACTT
genomic: TTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|192297183|gb|FG988279.1|FG988279
EST:     TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|193609701|gb|FK560701.1|FK560701
EST:     TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
EST: gi|19934708|gb|BQ079738.1|BQ079738
EST:     TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGT                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT
genomic: TTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTT