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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatgtttctcagtgatatatatatatatatattgcttgttgaatataactttcaagaatgtacaactgtactttcagagagaattagaacttaggaaaatgtaaaaagcacataatgaaatttgacagccataacaattttggatggtggtacag

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35190.2 (Glycine max), 5'ss of exon 21
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 5'ss of exon 22
GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatgtttctcagtgatatatatatatatatattgcttgttgaatataactttcaagaatgtacaactgtactttcagagagaattagaacttaggaaaatgtaaaaagcacataatgaaatttgacagccataacaattttggatggtggtacag
|||||||| || ||||||||||| || |||||||| |||||||| || ||||| ||| | |||||||| |||||||||  |  | ||  |   |  | | |   | | | | || ||| ||     | ||||  || ||||    |    || | ||  | |  |  | || |  | |  ||                                                      
GCTTTGGCTGACATGAAATCCATCAACCTTTTTGGGGTTCAGCAGATATGTCGGAATTCAATTGCATTGGAACAGgtacattttattctttttttttcttttcttttctttttttcttttt----ttcactt--aaaaatgattgaaataacatacaatgtg--tgggcacatctgcacctgc-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204575|gb|BI427343.1|BI427343
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|17963254|gb|BM270005.1|BM270005
EST:     ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACA
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACA
EST: gi|51342395|gb|CO983470.1|CO983470
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|15812288|gb|BI784563.1|BI784563
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|51337373|gb|CO981239.1|CO981239
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|254340255|gb|GR858380.1|GR858380
EST:     ATC-TTTTGGTGTTCAGCAAA-TTGTCGAAATGCTA-TGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|254341252|gb|GR854980.1|GR854980
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|13789586|gb|BG652177.1|BG652177
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG