Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGATTTGGAGTTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATgtaagtcattaacacctaatcatattatattaatttttgttctttcattttttattgcatgtaattgttttcatatacaataaacttttaatgtactcaattttttgtgatgaag

Basic information

species Glycine max
transcript GLYMA09G15200.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 22
TTCTTGATTTGGAGTTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATgtaag-tcattaacacctaatcatattatattaatttttgttct-ttcattttttattgcatgtaattgttttcatatacaataaacttttaatgtactcaattttttg----tgatgaag
| ||||| |   |  | |  || || || || |||||||| ||||| ||| | ||||||||||  ||||| || |||||||| ||||| || ||||||||||||| || || | |   ||     |||      |||||||||| ||  | |||| ||     |  || ||||||  ||  || ||  ||| |        ||||| ||    ||||| ||
TGCTTGACTATTATCTCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATgtaagatccttgagagtcaaggcccttagtcccttttttgttctgtttttctttttttttggattttttttttcaggtatcatcaaagtttcaaaactgagattttatgctactgatgtag

upper sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 47
TTCTTGATTTGGAGTTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATgtaag-tcattaacacctaatcatattatattaatttttgttctttcattttttattgcatgtaattgttttcatatacaat-aaacttttaatgtactcaattttttgtgatgaag---
| ||||| |   |  | |  || || || || |||||||| ||||| ||| | ||||||||||  ||||| || |||||||| ||||| || ||||||||||||| || || | |   ||     |||      |||||||||| |  |||||| ||         | ||||||  ||  || ||| ||||||       | ||| |  |  ||| |   
TGCTTGACTATTATCTCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATgtaagatccttgagagtcaaggcccttagtcccctttttgttctgtttttttttttttttgaattcttttttcaggtatcatcaaagttttaaaactgagattttatgctactgatgtag

upper sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTGATTTGGAGTTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATgtaagtcattaacacctaatcatattatattaatttttgttctttcattttttattgcatgtaattgttttcatatacaataaacttttaatgtactcaattttttgtgatgaag---
| ||||| |   |  | |  || || || || |||||||| ||||| ||| | |||||||||| || ||| || |||||||| |||||||| |||||||||||||    | | |   | |||       |   |  |||||  |||  |||||      ||  ||| ||||||| ||     ||  |||||         ||| |  |  |||||   
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaa---agtcaaggcccttagttccttgtttattctcttttt------tgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag

upper sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 22
TTCTTGATTTGGAGTTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATgtaag-tcattaacacctaatcatattatattaatttttgttctttcattt----tttattgcatgtaattgttttcatatacaataaacttttaa--tgtactcaattttttgtgatgaag
| ||||| |   |    |  || || || || |||||||| ||||| ||| | ||||||||||  ||||| || |||||||| ||||| || ||||||||||||| || | || |   ||     |||     |||||| |||| |  |||    ||| ||   | |  ||||||   |||    ||| |||| ||  ||  ||    | ||  ||||| ||
TGCTTGACTATCATCGCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATgtaagatcctcaaaagtcaaggcccttagtcccatttttattctcttttttgggattttttttttttttttgtttgtgtatcatctaatctttaaaactgagcttttatgttactgatgtag