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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaagttgtttttaactagatttcagttatatatttgatttattttaatgcatcaatattctaatataaatatattacagcag

Basic information

species Glycine max
transcript GLYMA09G00460.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00460.2 (Glycine max), 5'ss of exon 21
lower sequence: Vv19s0027g01090.t01 (Vitis vinifera), 5'ss of exon 22
ATGTAATCGATGCCAGATAATCAACCTT-ACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggc-------caagttgtttttaactagatttca-gttatat-atttgattt-attttaat---gcatcaatattctaatataaatata--ttaca-gcag----
||| || || || || || |||||  |  | ||| || || ||||||||||| |||||||  ||||||||||| || |||||||| || |||||  ||||||||  |       | |   |   |||| |  ||| || | | | | || |||| | | | || |   |  ||   | | ||| | |  | ||  || || |||     
ATGCAACCGTTGTCAAATGATCAATTTGGATAATCAA-GCAGGACAAGTGCAGAAGTCAACCGAACCTTTGGCTACCTTAGCATCATATAGGAGAATAAAGgttaccttcaattctacccggcattaattgaattccatgctctgttatctgatctcactgtagtttggtttcccaagtttaacaaacttttaattttcatgcaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098412|gb|HO760153.1|HO760153
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         GGAAAAATTTTGTTTGGTATACTGGTGAAACATGTTTCTATTGACGGAGAG
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
EST: gi|209697831|gb|BW670087.1|BW670087
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         GGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         C
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcag-
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         C
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcag-
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         C
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcag-
EST: gi|213594870|gb|DB977212.1|DB977212
EST:     AAAGTCAAATGAACCTTTGGCAACTTTAGCCA-CCTACAGGAGGGTAAAG                         GGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
genomic: AAAGTCAAATGAACCTTTGGCAACTTTAG-CATCCTACAGGAGGGTAAAGgttggccaag ... attacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG