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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaagttgtttttaactagatttcagttatatatttgatttattttaatgcatcaatattctaatataaatatattacag

Basic information

species Glycine max
transcript GLYMA09G00460.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00460.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv19s0027g01090.t01 (Vitis vinifera), 5'ss of exon 22
ATGTAATCGATGCCAGATAATCAACCTT-ACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggcca-agttgtttttaactagatttcagttatatatttgattt----attttaatgca--tcaatattctaatataaatatattacag----------------
||| || || || || || |||||  |  | ||| || || ||||||||||| |||||||  ||||||||||| || |||||||| || |||||  ||||||||  |   | || |      |   | || | ||  ||  |   ||     || | | || |  |   | | | ||  | || | | |                    
ATGCAACCGTTGTCAAATGATCAATTTGGATAATCAA-GCAGGACAAGTGCAGAAGTCAACCGAACCTTTGGCTACCTTAGCATCATATAGGAGAATAAAGgttaccttcaattctacccggcattaattgaattccatgctctgttatctgatctcactgtagtttggtttcccaagtttaacaaacttttaattttcatgcaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594870|gb|DB977212.1|DB977212
EST:     AAAGTCAAATGAACCTTTGGCAACTTTAGCCA-CCTACAGGAGGGT-AA-                         -AGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
genomic: AAAGTCAAATGAACCTTTGGCAACTTTAG-CATCCTACAGGAGGGTAAAGgttggccaag ... tatattacagCAGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
EST: gi|209697831|gb|BW670087.1|BW670087
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGT-AA-                         -AGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... tatattacagCAGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
EST: gi|214006397|gb|DB986145.1|DB986145
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGT-AA-                         -AGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... tatattacagCAGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         CAGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... tatattacagCAGGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGA