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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAGAAACAATCATCCCTTCTCTCGAAATTGACACGCCAATTGAGTATTCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaatgtgtaagttgctttcttactcatttacatatttattggatgggtgagtcatcagtattaattaaacgtatttgtgcacctcttttgtttt...

Basic information

species Glycine max
transcript GLYMA09G00430.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602618|gb|BQ612949.1|BQ612949
EST:     TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: gi|193404314|gb|FK368720.1|FK368720
EST:     CTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: CTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: gi|14125800|gb|BG790238.1|BG790238
EST:     TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: gi|15000625|gb|BI321439.1|BI321439
EST:     TCATGACACCCGAGCAGCATCTGCCTCTGGCTGGTCAAATGGCAGTGCAG                         AGAGTAGCCCAAGAAACAGCAGCGGACCTGGTGATGACTGG
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGG
EST: gi|6746909|gb|AW317365.1|AW317365
EST:     TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: gi|209705402|gb|BW678519.1|BW678519
EST:     TCATGACAACCGAGCAGCTGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: gi|192300150|gb|FG989272.1|FG989272
EST:     TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
EST: gi|9203407|gb|BE329560.1|BE329560
EST:     TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAG                         AGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT
genomic: TCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaat ... cgttttgcagAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCCAGAAACAATCATCCCTTCTCTCGAAATTGACACGCCAATTGAGTATTCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGgtatgtcaatgtgtaagttgctttcttactcatttacatatttattggatgggtgagtcatcagtattaattaaacgtatttgtgcacctcttttgtttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC