Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTTGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAAgtatgtatgatttgcctttgccttttccttttcagagaaattattgtttcttattcattgttaatcttgtttcatttcctaaaaaaatattgtcggcag

Basic information

species Glycine max
transcript GLYMA08G14480.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os01g73530.1 (Oryza sativa), 5'ss of exon 24
GCACGCTTGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAAgtatgtatgatttgcctttgccttttccttttcagagaaattattgtttcttattcattgttaatcttgtttcatttcctaaaaaaatattgtcggcag
|| || |||||||| |||   || ||||| |||||||| |||||||||||||||||||||   | |   |||    | | ||          |||    ||| |||   ||   |   |   | | ||      |||  ||| |    ||||
GCTCGTTTGTTCTTCCACTGTCCAAAATTTGGTATCCTAGACGAGTGCACCAAgtatgtagcgtatagttttttaatgttctc---------atttccattttttaccaataaatgcacagctcttat------aaagcatactcattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270804|gb|BM887060.1|BM887060
EST:     TGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAA                         TGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT
genomic: TGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAAgtatgtatga ... ttgtcggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT
EST: gi|22932839|gb|BU549978.1|BU549978
EST:     CGCTTGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCANCAA                         TGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT
genomic: CGCTTGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAAgtatgtatga ... ttgtcggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT