1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ATGCCATCCAAAATTCCCAAAGCTGCTCAAGTCCCACAAAAAGTCCAGTCAAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatattacccattttattctgttacgtgtccaaaattaatatatctattttaaattgatctgtgactcaatctcccttgtttattctgcttcttacattcag
species | Glycine max |
transcript | GLYMA08G01800.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACEST: gi|51343289|gb|CO984022.1|CO984022
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACEST: gi|193634007|gb|FK581115.1|FK581115
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACEST: gi|21889656|gb|BQ742869.1|BQ742869
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACEST: gi|208283984|gb|GE087290.1|GE087290
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACEST: gi|20812721|gb|BQ297199.1|BQ297199
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACEST: gi|193660680|gb|FK606404.1|FK606404
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: AGACCTTCTAGGCTTTCATTGAACAAAACCTACCTCGAAGGTTCTGTCAA GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAG-CCCCTAAAC
genomic: AGACCTTCTAGGCTTTCATTGAACAAAACCT-CCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCATCCAAAATTCCCAAAGCTGCTCAAGTCCCACAAAAAGTCCAGTCAAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatattacccattttattctgttacgtgtccaaaattaatatatctattttaaattgatctgtgactcaatctcccttgtttattctgcttcttacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC