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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTCATTGATGGAAGCATATCCATTGAGTGTCCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAGgtatactgttctgtcacaatagtatgttctttgtgctgaaaacactcattggttttgaatataaggcttagacaatgacaaacacaactttgtaattata...

Basic information

species Glycine max
transcript GLYMA07G06160.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os07g23990.1 (Oryza sativa), 5'ss of exon 19
ACTTTCATTGATGGAAGCATATCCATTGAGTGTCCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAGgtatactgttctgtcacaatagtatgttctttgtgctgaaaac-actcat---tggttttgaatataaggcttagacaatgacaaacacaactttgtaattata
 || |||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||||||| || ||||| ||||| || ||||||||||| || ||||| |    |||| | | || | |   ||   |||||  ||||| ||||     ||  || |||| |     | | |  ||   || |     | |  ||  |||
TCTCTCATTGATGGAAGCTTATTCCTTGAGTGTTCAGCATGAGCAAACAACCTTGCAAATTCTTCGTGCAAAGCTTGGGCCAGATGACTTGCGGACTCAGgttttac-ttctatgagaa-aatgaatttgatgtgcaaaaaactactctcctgtgacttagaatttcttagtcaaa--attttaatctttggtgttaaaaaata

upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 21
ACTTTCATTGATGGAAGCATATCCATTGAGTGTCCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAGgtatactgttc----tgtcacaatagtatgttctttgtgctgaaaacactcattggttttga-atataaggcttagacaatgacaaacacaactttgtaattata
 || ||||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| || ||||| || |||||||||||| |||| ||||||||||   || |    | ||   | |  ||    ||| |  || || || | ||     |||  |  ||| |  ||     | | |  ||  | ||  || ||   
TCTATCATTGATGGAAGCATACCCTTTGAGCGTTCAGCATGAGCAAACAACCTTGCAAATTCTCCGAGCAAAGCTGGGCCCTGATGACCTGCGTACACAGgtattgagtccaagatatccacaaatcataaattttcttttggaagcatttatgtcccttgctacttaaag--taatagctcatatgcatgaattattattt---

upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 21
lower sequence: EFJ26734 (Selaginella moellendorffii), 5'ss of exon 20
ACTTTCATTGATGGAAGCATATCCATTGAGTGTCCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAGgtatactgttctgtcacaatagtatgttctttgtgctgaaaacactcattggttttgaatataaggcttagacaatgacaaacacaactttgtaattata
 |||||  | |||||||| ||  |  | ||||| ||||| |||||||||||  | |||||  |||  || || ||||| ||||||||||||||||||||||||  ||    | |      |||  | | |||     ||         ||  |||| | |||   |                                  
CCTTTCGCTAATGGAAGCGTACTCCCTCAGTGTACAGCACGAGCAAACAACGCTTCAAATCTTGCAAGCTAAGCTTGGTCCTGATGACTTGCGCACACAGgta--ctaacttatt-tgcgagtgcgctattttattcgatttgttctttttcttttcattatgtag----------------------------------

upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 21
lower sequence: EFJ26424 (Selaginella moellendorffii), 5'ss of exon 20
ACTTTCATTGATGGAAGCATATCCATTGAGTGTCCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAGgtatactgttctgtcacaatagtatgttctttgtgctgaaaacactcattggttttgaatataaggcttagacaatgacaaacacaactttgtaattata
 |||||  | |||||||| ||  |  | ||||| ||||| |||||||||||  | |||||  |||  || || ||||| ||||||||||||||||||||||||  ||    | |      |||    | ||| |  |  |     || ||   ||| | |||   |                                  
CCTTTCGCTAATGGAAGCGTACTCCCTCAGTGTACAGCACGAGCAAACAACGCTTCAAATCTTGCAAGCTAAGCTTGGTCCTGATGACTTGCGCACACAGgta--ctaacttatt-tgcgagtgcactattt-tattcgatttgttctttttctttcattatgtag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9987721|gb|BE661829.1|BE661829
EST:     CTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAG                         GATGCTGCGGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAA
genomic: CTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGCACACAGgtatactgtt ... aatttgacagGATGCTGCGGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAA