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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttcttttaccttatctatag

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 21
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc---tcta-agctttcctccttattttctaatttccactgtt-tttatggtcaccaattttcttttaccttatctatag------------------
 |||||| | || |||||||| || ||||||||| |||| ||||| ||||||||||||||||||||||| || ||||| ||  |    | ||| || || ||||| |      || | |    ||||  | |   | |  |     ||||| |   ||||     ||  |   |     |||  | |                   
ATTGGGTTTCATTGGTGCTGGTACAAACAATGCTAGAATAGCTGGTATGCTTCGCAATCTTTCAAGTTACTATTACAAAGAAGCTGCGCATCTGTTTTGTgtaagttaataaatccacaatgatccttttaaacctgtgctccattctgttgtacctggttgtatataatgcgtacatatattgacaaaattttgcatgtattcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os09g15750.1 (Oryza sativa), 5'ss of exon 21
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc-tctaag--------ctttcctccttattttctaatttccactgtttttatg-----gtcaccaattttcttttaccttatctatag-----------
| ||||  | ||||| ||||| || |||||||| ||||| ||||| |||||||| || || ||||||||||| ||||| ||  |  | | ||| || || ||||| |    |||||          |||  || || ||||   | ||   ||| | | |||     ||   ||| |||| | |   || | |  |            
CCTGGGCTTGATAGGGGCTGGTACAAACAATGCCCGAATAGCTGGGATGCTTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaaatctaaaataaacattttttatctttgttttgccaattattctgatctcatgctgttgtattcaagtttcatatcagtttttttcatttgactttcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G155384_T02 (Zea mays), 5'ss of exon 21
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttctctaa-------gcttt--cctcctt-attttctaatt----tccactgtttttatggtcaccaattttcttttaccttatctatag-------------
 |||||| | || |||||||| || ||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||  |    | ||| || || |||||  |     ||         |||  | ||||| || | |||||     | |  || |||  |  | |      | | || | |   | ||| |             
ATTGGGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCTGCTCATCTGTTTTGTgtaagtatatatcaacgacgatattttggcatccttcatgtactaataatggttccttggtttcgttataagttccatccattgatccgttttatcgtgttcgtcgtcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G155384_T01 (Zea mays), 5'ss of exon 21
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttctctaa-------gcttt--cctcctt-attttctaatt----tccactgtttttatggtcaccaattttcttttaccttatctatag------------------
    ||| | || |||||||| || ||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||  |    | ||| || || |||||  |     ||         |||  | ||||| || | |||||     | |  || |||  |  | |      | | || | |   | ||| |                  
----GGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCTGCTCATCTGTTTTGTGTAAgtatatatcaacgacgatattttggcatccttcatgtactaataatggttccttggtttcgttataagttccatccattgatccgttttatcgtgttcgtcgtcaggttag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM5G816609_T01 (Zea mays), 5'ss of exon 7
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctt-------------tctctaagctttcctccttattttctaatttcc--actgtttttatggtcaccaattttcttttaccttatc-tatag--------
 |||||| | || |||||||| || ||||||||  |||| |||| ||||||||||||||||||||||||||||||||| ||  |    | ||| || || |||||  |             ||  |  || | | || |    || |  || |   | ||||||| | ||  |    |||  || |  ||||  | ||         
ATTGGGTTTGATTGGTGCTGGCACAAACAATGCCAGAATAGCTGCCATGCTTCGCAATCTTTCAAGTTATTACTACAAAGAAGCAGCTCATCTGTTTTGTgtaagtatagatcgataatgatcatttggcatccttcatggacttttggttccttgattgttttt-tagtttcatgctttgattaattttattgtgtacatcatcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 19
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaa-gctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttcttttaccttatctatag-----------
| | ||  | ||||| |||||||| ||||||||  | || |||||||||||| | ||||| || || ||||| ||||||||| |||||||||| ||||| |||| | ||| |     ||||     || |  |  |||   ||| |||| ||        |   || || | | || |||  ||           
CCTTGGATTGATAGGCGCTGGAACCAACAATGCAAGGATAGCTGGCATGCTTAGAAATCTCTCCAGCTATTATTACAAGGATGCCAGCCTTCTTTTCTGTgtaacgttttatgatttctttttaagttttcatggaataaacacggtttctacttatgataggcttgttct-cattgtcttaagtcacaatgcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 21
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttcttttaccttatctatag-----------------------
||||||| | |||||||| || || |||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||  | |||||||| ||||| ||||   |||| | |  || |||    ||| ||||  ||    |   || ||   ||     ||   | ||  ||  |   |                        
CTTGGGTTTGATAGGTGCGGGTACCAACAATGCTCGAATTGCTGGCATGCTCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattctttta--ttacctttaaattctctagattttctttcattcat--ccaatgggttctatatattttcacaccaatattgttttggccacttgtgcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: PP1S414_22V6.1 (Physcomitrella patens), 5'ss of exon 21
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctt------tctctaagctttcctccttattttctaatttccactgtttt-tatggtcaccaattttcttttaccttatctatag------------
 ||||| || || || ||||| || || ||||| ||||||||||||||||||||||| ||||| || || || ||||||||  | |||||||||||||| ||| || |      | |||    | | ||| | ||||| | ||| |  | |  |    |  |     |   |  | | |||||  |||              
TTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAATTGCTGGCATGCTTCGCAACCTTTCTAGCTACTATTACAAGGACCCAAGCCTTCTATTCTGTgtacgcctctaccctttctgcattctgctcttaattttttcattcctgcagaataactttctttttgagactactattccttacatattaatgtcgttgcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: EFJ26022 (Selaginella moellendorffii), 5'ss of exon 20
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttcttttaccttatctatag
  | || || || || || ||||| |||||||| || ||||| || |||||||| |   | || || ||||||||||||||| |||||||||| ||||||||||| ||      | || || |  || | || |  ||| |   ||||| ||     |  | |||  |  | ||     | ||
TCTTGGACTTATTGGCGCCGGAACAAACAATGCGCGTATTGCGGGAATGCTTCGAAGCTTGTCCAGCTATTACTACAAGGATCCCAGCCTTCTGTTCTGCgtaagttt-----gatctctcttgtttttctttt--ttttcttcgttttcat-----cttagttttgtcaatctctgtcacag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 21
lower sequence: EFJ14427 (Selaginella moellendorffii), 5'ss of exon 20
CTTGGGTCTAATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttcttttaccttatctatag
  | || || || || |||||||| |||||||| || ||||| || |||||||| |   | || || ||||||||||||||| |||||||||| ||||||||||| ||      | || || |  || | || |  ||| |   ||||| ||     |  | |||  |  | ||     | ||
TCTTGGACTTATTGGCGCTGGAACAAACAATGCGCGTATTGCGGGAATGCTTCGAAGCTTGTCCAGCTATTACTACAAGGATCCCAGCCTTCTGTTCTGCgtaagttt-----gatctctcttgtttttctttt--ttttcttcgttttcat-----cttagttttgtcaatctctgtcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193711290|gb|FK643885.1|FK643885
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGNTTGCCCAAGGTCTTGTACATTTGGGAA
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAA
EST: gi|7693027|gb|AW761125.1|AW761125
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCA
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCA
EST: gi|120530135|gb|EH258269.1|EH258269
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|193468156|gb|FK431799.1|FK431799
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAA
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAA
EST: gi|10847592|gb|BF070244.1|BF070244
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|6566730|gb|AW234362.1|AW234362
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|10237756|gb|BE806644.1|BE806644
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAAGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|10234169|gb|BE803057.1|BE803057
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTGGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|9440032|gb|BE440543.1|BE440543
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|22521874|gb|BU080685.1|BU080685
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|120492692|gb|EH220859.1|EH220859
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|120530034|gb|EH258168.1|EH258168
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT