Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGGGACATCCATTCGGCATGGGTGTAGTAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACTAGAGCCCCAGGCAACCCTTGGCCACAGgttagatccattggtttccgaaatattagttgtgtttgttctttcagaccatttgtcaatatagactgcttgagaaattggacatttggcttgccattac...

Basic information

species Glycine max
transcript GLYMA06G13280.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13280.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
CATAGGGACATCCATTCGGCATGGGTGTAGTAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACTAGAGCCCCAGGCAACCCTTGGCCACAGgttagatccattgg--------tttccgaaatattagttgtgtttgttctttcagaccatttgtcaat-----atagactgcttgagaaattggacatttggcttgccattac--------------------------------------------------------------------------
||||||||||||||| || ||||| || |||||| |||| ||||| || |||||||||||||||||||| ||  | || || |||||||| ||||||||||||  |  |||           | |||       |     ||||     |   | |    |  || |      ||  |  | |   | || ||||  | |  |||||    ||                                                                          
CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789402|gb|BG651993.1|BG651993
EST:     CACAAACTAGAGCCCCAGGCAACCCTTGGCCACAG                         TGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAA
genomic: CACAAACTAGAGCCCCAGGCAACCCTTGGCCACAGgttagatcca ... tgaaatacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAA