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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagtttttggttgcaactttgccaatttgtaatctgtgtgactgtctgcattgcctaaaattaagggttgtttgcttaatatttttgggtcgtagggt...

Basic information

species Glycine max
transcript GLYMA05G28950.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015090|gb|CX701832.1|CX701832
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|6913740|gb|AW395270.1|AW395270
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|23733694|gb|BU765054.1|BU765054
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATATTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|213597745|gb|DB964482.1|DB964482
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|51343620|gb|CO984353.1|CO984353
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|298166149|gb|HO009120.1|HO009120
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|58016994|gb|CX703736.1|CX703736
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|9258815|gb|BE346962.1|BE346962
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|14008648|gb|BG725252.1|BG725252
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|51336605|gb|CO980471.1|CO980471
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|254327539|gb|GR837148.1|GR837148
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|57575075|gb|CX548050.1|CX548050
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
EST: gi|51338442|gb|CO982308.1|CO982308
EST:     TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG                         GTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG
genomic: TGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGgttagttttt ... tttgtggcagGTTTTATGTGCTGGTAAAGACCTTGCTACAGAACAAACAGCTGGTCGTATG