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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGGGACATCCATTCGGCATGGGTGTAGTAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccgttggtttccgaaatactagttgtgtttattctttcagaccatttgtcaaaatagacagcttgagaaattggacatttcgcttgccattac...

Basic information

species Glycine max
transcript GLYMA04G41540.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
CATAGGGACATCCATTCGGCATGGGTGTAGTAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccgttgg--------tttccgaaatactagttgtgtttattctttcagaccatttgtcaa-----aatagacagcttgagaaattggacatttcgcttgccattac--------------------------------------------------------------------------
||||||||||||||| || ||||| || |||||| |||| ||||| || |||||||||||||||||||| ||  |||| || |||||||| ||||||||||||  |  | |           | |||      ||     |||| |   |   | |    |  || |     |||  |  | |   | || ||||  | |  |||||    ||                                                                          
CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400585|gb|BM177367.1|BM177367
EST:     TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAG                         TGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
genomic: TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccg ... tgaaacacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
EST: gi|254330158|gb|GR839711.1|GR839711
EST:     TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAG                         TGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
genomic: TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccg ... tgaaacacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
EST: gi|14008715|gb|BG725319.1|BG725319
EST:     TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAG                         TGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
genomic: TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccg ... tgaaacacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
EST: gi|254333029|gb|GR850279.1|GR850279
EST:     TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAG                         TGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA
genomic: TTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccg ... tgaaacacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCGGCGAAA