Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATAAATGTTgtgagttatctattgaatttcagctgattaccatatttgatccttcaatttatttgtttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatctcgtgtcatttgtcactag

Basic information

species Glycine max
transcript GLYMA04G09230.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 18
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATAAATGTTgtgagttatctattgaatttcagctgattaccatatttgatccttcaatttatttgtttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatctcgtgtcatttgtcactag
|||||  || || |||||||| ||||||||||||||| |||| || ||||| ||||| ||| | ||||| ||||||||| ||||||| ||  | ||||||||||||     | | |  ||   ||| |    ||||||     ||  |    ||  |||   | |||   ||    |||||   |  | || | |||    |||| ||| |                                               
TCCTGCTGGGATAAATGCTCTATTTAGTCATGGACCACGGCGGTCAGCAGGTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagt-----actcatctttgactg-tacttatattttgatatt--accagttcatttcaaatgctttagg----ttcca---aaaaaggggaaattatataatttggttggct-------------------------------------------

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 5'ss of exon 20
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATAAATGTTgtgagttatcta--ttgaatttcagctgattaccatat-ttgatccttcaatttatttgtttgtcaggctgatggacctttccatttatcagggtggaatatagtaatat-ggattatatttttctggttttaactggggatctcgtgtcatttgtcactag-------------
|||||  ||||| |||||||| ||||||||||||||| |||| || ||||||||||| ||| | |||||  | |||||  |||| ||  |  | |||||||| |||   |||  |  |  | ||  | |||     ||  | ||   || || |  |  ||||  |  || |     || |   |       |     ||  | |  | |  | ||       | | ||| | | ||  ||| |    ||||    | ||               
TCCTGCTGGAATAAATGCTCTTTTTAGTCATGGACCACGGCGATCAGCAGGCCTTGCTCGTGTGTATGCATTATGGAACATTACTTCACTGGTCAATGTTgtaagtatgctatgtccatctgcatttcattgttgcatgcttatttgtctatattgtattttgagatcctaagacggctgtagttagtgtctgccattattcactggttttagctttccccgattttgttcttattgttgatttatcttcataatcctcttcccatgatattcag

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G412234_T01 (Zea mays), 5'ss of exon 10
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATAAATGTTgtgag--ttatctattgaatttcagctgattaccatatttg-atccttcaatttatttgtttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatctcgtgtcatttgtcactag
||||| ||| || |||||||| |||||||||||||| ||||| || ||||||||||| ||| | |||||  |||||||  | || ||  |  | |||||||| ||  || |  |   |  | ||  | | |   ||||  | |||  |||       ||  || ||     |||    |||   ||       |||   |       |||    |   | |   || |  || || |                        
TCCTGCCGGTATAAATGCTCTATTTAGTCATGGACCGAGGCGGTCAGCAGGCCTTGCTCGTGTGTATGCATTGTGGAACATAACTTCACTGGTCAATGTTgtaagtattcttcacccacctacatttcaatgttatatcggtatctatcacacgtaatggctg-caattgaatgagttttttttttctatcaagtgt--tgcgcctctataaccttcctgtgcttgttaatatctag------------------------

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM5G820781_T01 (Zea mays), 5'ss of exon 5
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATAAATGTTgtgagttatctattgaatttcagctgattaccatatttgatccttcaatttatttgtttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatctcgtgtcatttgtcactag
|||||  || || |||||||| |||||||||||||| ||||| || ||||||||||| ||| | |||||  |||||||  | || ||  |  | ||||| || |||  ||| |  |    |  |  ||| | || ||  |||      |  |  | | |  |   ||    |  |||   | |    ||                                                                     
TCCTGCTGGTATAAATGCTCTATTTAGTCATGGACCGAGGCGATCAGCAGGCCTTGCTCGTGTATATGCATTGTGGAACATAACTTCACTGGTCAATGTCgtaagtattct-tcaaccacctac--attccaatgttatatcaagtgttacacctctataactttctccctgtgcttgttaatccctag---------------------------------------------------------------------