Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAGTGAGGGGCAGGTTACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatattttcttgtctcagtaatttgacattgtttatttttccatatgtgctatcccatatttcttctgccagctttctctgttttttttttttgt...

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 21
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 20
AATGGAGTGAGGGGCAGGTTACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatattttcttgtctcagtaatttgacattgtttattttt--------ccatatgtgctatcccatatttcttctgccagctttctctgttttttttttttgt
| ||| | || || |||||||| |||||||||||||||||||||||||| ||||||   ||||| || |||| |||    | ||   |||   |||      ||| ||||  |||          | |||  |||   |||  || || ||  |      ||| |  || |||     
AGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccc--tattctttagctttaacctatattacatgaactaaagcatgatt-ttttggtatggggatctatcattcttt-----

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 21
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 20
AATGGAGTGAGGGGCAGGTTACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatattttcttgtctcagtaatttgacattgtttatttttccatatgtgctatcccatatttcttctgccagctttctctgt---tttttttttttgt
| ||| |||| || |||||||| |||||||||||||||||||| ||||| ||||||   ||||| || |||| |||    | ||   |||   ||| |    ||| ||||  |||  |  | || ||    |  |      ||     ||  | ||    | | |  ||  ||
AGTGGTGTGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTCGGTGATTATTTTACAGATGTGAAGATgtaagttctctctcagatctggataactc--tattctttagcttta-acctatgttacataaactaaagcatgattttttggtatggggatctgtcattaagt

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 21
lower sequence: EFJ12004 (Selaginella moellendorffii), 5'ss of exon 19
AATGGAGTGAGGGGCAGGTTACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatattttcttgtctcagtaatttgacattgtttatttttccatatgtgctatcccatatttcttctgccagctttctctgttttttttttttgt
| |||  ||| || |  || || |||||| |||||||||||||||| || || ||||| |||||||| |||||||   |     ||  |  |      |  || |||   | || |                                                      
ATTGGCATGAAGGACTTGTGACCGAGTACCTGGTTGCAACATTTGGCGATTACTTTGGGGATGTAAAGATgtgag---acacgattaacctacccgactttcaatgtgcgtgttgcag----------------------------------------------------

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 21
lower sequence: EFJ08885 (Selaginella moellendorffii), 5'ss of exon 19
AATGGAGTGAGGGGCAGGTTACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgag-tatattttcttgtctcagtaatttgacattgtttatttttccatatgtgctatcccatatttcttctgccagctttctctgttttttttttttgt
| |||  ||| || |  || || |||||| |||||||||||||||| || || ||||| |||||||| |||||||  |   ||    |    |      |  || |||   |||| |                                                      
ATTGGCATGAAGGACTTGTGACCGAGTACCTGGTTGCAACATTTGGCGATTACTTTGGGGATGTAAAGATgtgagacacgattaaccgagctacccgactttcaatgtgcgttttgcag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990484|gb|BI316157.1|BI316157
EST:     ACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTGAAAAT                         GTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAA
genomic: ACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatat ... tatattcaagGTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAA
EST: gi|151398921|gb|EV268792.1|EV268792
EST:     ACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAAT                         GTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAAGA
genomic: ACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatat ... tatattcaagGTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAAGA