Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacatttgggaaaactataatttcctgtgaatattcattaccttgctttcatcatgccatgcttttgtagatactaaccaccaaactactacagt...
Basic information
species | Glycine max |
transcript | GLYMA02G45000.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 21
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 5'ss of exon 10
GTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacatttgggaaaactataatttcctgtgaatattca---ttaccttgctttcatcatgccatgcttttgtagatactaaccaccaaactactacagt
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GTTCTTGATCACCTAGTGATTCAGAAGCTAAATGCTGAGGGCAGGCTCGAGAAGAAAGAATCAAAAAAAGGTGGTTCCATGTTTGACAAGgtaagtttctgcaccagttatttagtttact-taggtatttgggttgatttggatgtcatattggtttggtacaaca-atattacttaggtagttttaacaa-
upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G010342_T01 (Zea mays), 5'ss of exon 19
GTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacatttgggaaaactataatttcctgtga-atattcattaccttgctttcatcatgccatgc-ttttgtagatactaaccaccaaactactacagt
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GTTCTTGATCACTTGGTTATTCAGAAGCTAAATGCTGAGGGCAGGCTTGAGAAGAAAGAATCCAAAAAGGGTGGCTCCATATTTGACAAGgtaggtttgctttcgactatcttctttccttgttttaggctaactgtttggcatgaattaccctataagttttgtattgggtggtttacaagattcatta--
upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 21
lower sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 23
GTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggac-atttgggaaaactataatttcctgtga-atattcattaccttgctttcatcatgc-catgcttttgtagatactaaccaccaaactactacagt
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GTTCTTGATCACTTGGTCATTCAGAAGCTAAACGCTGAGGGCAGGCTTGAGAAGAAAGAATCCAAAAAAGGTGGCCCCATATTTGACAAGgtaggttttggttccgaatatcttgtttccttgttttaggccaactgtttggcatgaattactctcgaagttttgtaggg--tggctatcgaa-tgtagcttc
upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 21
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 22
GTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacatttgggaaaactataatttcctgtgaatattcattaccttgctttcatcatgccatgcttttgtagatactaaccaccaaactactacagt
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GTTCTTGATCATTTGGTTATTCAAAAACTGAATGCGGAGGGTAGGCTGGAGAAGCGAGAAACTAAAAAAGG---AAGTAATTTTGACAAGgtaagggcatcttttgaatgtttgatttccttt--atcaaggtttaatttctgaaagaatgacccattact-tgtattctag------------------
upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 21
GTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacatttgggaaaactataatttcctgtgaatattcattaccttgctttcatcatgccatgcttttgtagatactaaccaccaaactactacagt-
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GTACTTGATCATTTGGTGATTCAAAAACTAAATGCAGAAGGTAGACTGGAGAAGAAAGAATCGAAAAAGGG---GAGTTACTTTGACAAAgtaaggatacattgtaaaacaattgttcttattggat-tacattggagatggttttggattttgaagctttgttggtgttgttttttaattgaagtcatcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16995860|gb|BM085232.1|BM085232EST: GTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAA AATGAGCTGTCTGCAATCTTACGATTCGGAGCAGAGGAGCTTTTTAAAGAA
genomic: GTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacat ... gaaacgacagAATGAGCTGTCTGCAATCTTACGATTCGGAGCAGAGGAGCTTTTTAAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAgtaaggacatttgggaaaactataatttcctgtgaatattcattaccttgctttcatcatgccatgcttttgtagatactaaccaccaaactactacagt
- - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccaa