Sequence
atgc intronic sequence ATGC exonic sequenceCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGgtatttcttcatttttttctaatattctctattttttgttttaattttggtcatgtatatttgctgtttaaacttgtgttcctagattttatatatatatatatattttgcacag
Basic information
species | Glycine max |
transcript | GLYMA17G05410.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 20
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 20
CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGgtatttcttcatttttttctaatattctctattttttgttttaattttggtcatgtatatttgctgtttaaacttgtgttcctagattttatatatatatatatattttgcacag
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CTTATCGGAAATATTGCTGAGAGATTTCATGCTTTATGTTTGAAAGACAGTGGTGTCTTATACGAGGATCCTCATATCCAGgt------ttgtttttttctagtttctgcttttatttattcaagtatgcagcagacaagcct-ccgagctttcttatgttccca--ttttgttgat-tgtttgtattcctcag--
upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 20
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 20
CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGgtatttcttcatttttttctaatattctctattttttgttttaattttggtcatgtatatttgctgtttaaacttgtgttcctagattttatatatatatatatattttgcacag
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CTTATCGGAAATATTGCTGAGAGATTTCATGCTTTATGTTTGAAAGACAGTGGTGTCTTATACGAGGATCCTCATATCCAGgt------ttgtttttttctagtttgtgcttttatttattcaagtatgcagcagacaagcct-ccgagctttcttatgttcccc-attttgttgat-tgtttgtattcctcag--
upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 20
CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGgtatttcttcatttttttctaatattctctattttttgt--tttaattttggtcatgtatatttgctgtttaaacttgtgttcctagattttatatatatatata-tattttgcacag------------------------------------------------------------------------
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CCAATAGGAAATATTGCAGAACGGTTCCATGCTTTATGCCTGAAGGATAGCGGTGTGCTATACGAGGATCCGTATATCCAGgttttaaatctttttttttaagtctttccttttgactgtaatttactctaacttaattgtcctttctggt--gttttgctattatagcccacatttatgttaatactagttagcatagttagattttttatttttttattttatgtaacttccatgagtcctatagtgaattttgtcaattaccttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14126214|gb|BG790652.1|BG790652EST: CTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAG ATTGGCATTAAAGCAGAATGGAGAGCTCATCAAGGGCATCTTGTTCTTTTC
genomic: CTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGgtatttcttc ... ttttgcacagATTGGCATTAAAGCAGAATGGAGAGCTCATCAAGGGCATCTTGTTCTTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGgtatttcttcatttttttctaatattctctattttttgttttaattttggtcatgtatatttgctgtttaaacttgtgttcctagattttatatatatatatatattttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT