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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGgtacttatctgatacatgtccacattatatgtccaagttgactttaattgatcttctttgtagtatatatgatctccaaacttcaatattcttaggtact...

Basic information

species Glycine max
transcript GLYMA16G19580.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302190|gb|FG996612.1|FG996612
EST:     CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG                         GGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
genomic: CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGgtacttatct ... tcaattgcagGGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
EST: gi|58014702|gb|CX701444.1|CX701444
EST:     CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG                         GGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
genomic: CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGgtacttatct ... tcaattgcagGGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
EST: gi|58025067|gb|CX711808.1|CX711808
EST:     CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG                         GGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
genomic: CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGgtacttatct ... tcaattgcagGGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
EST: gi|192302191|gb|FG996613.1|FG996613
EST:     CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG                         GGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
genomic: CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGgtacttatct ... tcaattgcagGGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
EST: gi|22523089|gb|BU081900.1|BU081900
EST:     CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG                         GGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT
genomic: CCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGgtacttatct ... tcaattgcagGGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTT