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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttctaaagttgtgctcttccctttatgacattactgatagggaaggattgattagaatgcagttacatttatagttgaagtatgccttttgcag

Basic information

species Glycine max
transcript GLYMA15G01680.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 21
TTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttctaaagttgtgctcttccctttatgacattactgatagggaaggattgattagaatgcagttacatttatagttgaagtatgccttttgcag
| |||  | |  |||| || | ||| || ||||||||||| ||||||||||| |||||||| || ||||| ||||| || |||||| ||||||| || |||||  |||||  | |||    | ||         |  ||||   ||  |    |||  | | |    || |  || | | |||     |  || |  |||
TGGCATCCATGTCTAAAGAACTAGGAAAGAACAATGTTGCTTTCCTTTGCTTGTTTATGTTAGGCAAATTGGAAGAATGTCTTCAATTGTTGGTTGATAGgtaggcttctgcaattgaatgcatctt------gccctact--cagtaacatcttgtatcggacattgt-atgttgacaattggtcctttgctgt-acag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 20
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 24
TTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgta-atcttctaaagttgtgctcttccctttatgacattactgatagggaaggattgattagaatgcagttacatttatagttgaagtatgccttttgcag
| |||   ||||| || |||||||| || |||||||| || || |||||||| || ||||||||| || ||||||||||||| || |||||||| |||||||| ||  | ||   ||    |||| | | |   ||||   |    |  |   |||   |  | ||| | ||    ||| |||  ||              
TGGCAGCACTTGCAAAAGAGCAAGGAAAGAACAATGTCGCTTTTCTTTGCTTGTTCATGTTGGGTCAAGTAGAAGACTGCCTGCATCTGTTGGTGGAAAGgtacattgtttactatt----tcttacatgtggaacatatattcccgcaactaattacgtcta-tgctgatattaatatggttacag--------------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 20
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 20
TTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttctaaagttgtgctcttccctttatgacattactgatagggaaggattgattagaatgcagttacatttatagttgaagtatgccttttgcag
|||||  |||||||||||| || ||||| ||||||||||| || ||||||||||||| | |||||| ||| ||||| || || ||  | ||||| || ||||| |    ||  |||   ||   || |||   | | |      |   | |  |   ||        ||||  |||||     |   ||    ||  |||
TTGCATGCCTTGCTAAGGAACAGGGGAAGAACAATGTTGCCTTTCTTTGCTTATTTACGCTGGGTAGATTGGAAGATTGTCTGCAGTTATTGGTGGAGAGgtatttcattactgtt-cacttggccgtttggaaaaat-----caaatatgtgtctttt--------gttatctttatgac-aagaaattatcttgacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 20
TTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttctaaagttgtgctcttccctttatgacattactgatagggaaggattgattagaatgcagttacatttatagttgaagtatgccttttgcag
|||||  ||||||||| || || ||||| ||||| ||||| |||||||| || || |||||||||||||| ||||| || || || |||||||| || |||||||  |     |||||  |  | |    |||  |  |  |||||    |||   |||  | |    ||    | |||  ||||| || |  |||||||
TTGCATCCCTTGCTAAAGAACAGGGGAAGAACAACGTTGCCTTCCTTTGTTTGTTCATGTTGGGTAAATTGGAAGAGTGTCTGCAGCTGTTGGTGGACAGgtaattgtt----gttgt--tactgcaaacatgggaacaaagatagttgtggagatattccactt---ttgggatgata-ctgaagcattctctttgcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 20
TTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttctaaagttgtgctcttccctttatgac--attactgatagggaaggattgattagaatgcagttacattta----------tagttgaagtatgccttttgcag-------------------------------------------------
|||     || |||||  |||| ||||| || ||||| ||||||||||| ||||| | | |||||||||| ||||| |||||||| |||||||| || |||||||| | |    |         || |  |  |   | | ||||||   |   |||    |        || ||||||          | || | ||| |   |    |||                                                 
TTGTTTCACTGGCTAAAAAGCAGGGGAAGAATAATGTCGCATTCCTTTGTTTATTCACGCTGGGTAAATTGGAAGAGTGCCTTCAGCTGTTGGTGGAGAGgtaatcattttccttaccatataaccatagaaaatcaactgctgatactaatttattacacatttacttatttcatttaacagacaatatggtggtagtttatatgacccaggaagttgagattgagtttactgattagactctgatatggtctgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7145778|gb|AW507700.1|AW507700
EST:     TTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAG                         CAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAA
genomic: TTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttct ... ccttttgcagCAATCGAATTCCGGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAA
EST: gi|7795673|gb|AW781070.1|AW781070
EST:     TTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAG                         CAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAA
genomic: TTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGgtaatcttct ... ccttttgcagCAATCGAATTCCGGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAA