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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag

Basic information

species Glycine max
transcript GLYMA14G06340.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
| | ||||||  | || |||||||| ||||||||||| ||||||||||| |  || || ||||| || ||||||||| | ||| | || ||||| |||||||| ||   |  |   ||         ||||  | |||  | |       |    |||  | |          || |  ||||    ||  |                         
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactactcctga---------tgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag---------------------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattcttt-catttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
| | ||||||  | || |||||||| ||||||||||| ||||||||||| |  || || ||||| || ||||||||| | ||| | || ||||| |||||||| ||   | ||  ||      | |  ||     |  ||      | | |       |     |||| || |  |  ||| |  | |                              
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactacacctgatgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacatt-caacag------------------------------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaatt-ctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtattt-ctgctgatgtatgttcctctaaataatatggaacag
||| ||| ||| | || |||||||| ||||||||| | ||||| ||||| |  || |||||||| || ||||||||| | ||||| || |||||||||||||| || || | | |    |       | || |||||   |||     |||| | |  ||| |  |  |   |   | ||    || |  |  || ||| |   | | |||        
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatg----ttggtatttcttaaggtggcataccttaat--attaaatttctcaacatggcatgcattgatattaaattttctttatattcatag-------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 7
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || |||||||| || ||||||||| | ||||| ||  ||||||||||||||||  |     ||  |  | ||    ||| ||   |  |   || | |  |   | ||  | |    | ||  | | | | |      |||   |    |              
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcagaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacac-acctgagttttctttac------atgcaacagcgag-------------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || |||||||| || ||||||||| | ||||| ||  ||||||||||||||||  |     ||  |    ||    ||| ||   |  |   || | |  |   | ||  | |    | ||  | | | | |      |||   |    |              
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacac-acctgagttttctttac------atgcaacagcgag-------------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgc-tgatgta-tgttcctctaaataatatggaacag-
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || |||||||| || ||||||||| | ||||| ||  ||||||||||||||||  |     ||  |    ||    ||| ||   |  |   || | |  |   | ||  | |    | || || | | | | ||   ||  |     | | ||| |      ||  
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacac-acctgaggtttctttacatgcaatagcgaggacccagata-tccatttcaag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 6
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || |||||||  || ||||||||| | ||||| ||  ||||||||||||||||  |    |||  |    ||    ||| ||   |  |   || | |  |   | ||  | |    | || || | | | |        |                       
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGACCTTTACTTTTTCTTGGGATCTTATCTGAGCTCCAGgtaatttctcttgttgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacac-acctgaggtttctttacatgcaacag-----------------------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 20
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
| ||||||||| | || |||||||| ||||| ||||| ||||||||||| | ||| || || || |||||||||||||| || |||||||||||    |||||||| | |||         | | | || | |  |    ||||   | | |  |  |   |  | |  |   |||  || |     |||| | | |||||   | |||        
ACTGTGAGCAACTTGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCGTACGAAGGGCTGTACTTTTTCCTAGGTTCATACTTGAGTATGAGgtaattttatca---------agatcctgctgtcattcctgtaaacaagcaccatgcagcaatttgtatttttatgacttac----aatgtct-tccctctgtgtgatag-------

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 20
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctc-attttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag
||| |||||||||||| ||||||   ||| ||||||| |||||||||||||  ||||| || ||| |||||||||| || || || || |||||||| ||||||||  || | |   |  || |||||   ||||| | |||     || || |  |||||  |  ||| ||  ||   |||||  || |  |||   |                   
ATTCTGAGCAATTGGGTGTTGATCAATGCGTAAAACTCTTTGAGCAATTTAAATCATACGAAGGATTGTACTTTTTTCTGGGTTCTTATTTGAGCTCAAGgtaatttgtttagt--aaggaagaactttgctttctttaggtgcggtacatccaacttattttgtgattttcatatcgttttcttttggttcatggaacag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208315625|gb|GE117789.1|GE117789
EST:     AGGTCATATGAGGGACTGTAC-TTTTCCTTGGATCATACTTGAGCTCCAG                         TGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACTGG
genomic: AGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattcttt ... tatggaacagTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACTGG