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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAGgtttggggaatgtgcaaaattagtcttccaactaccttctctaatcatataattgggaatgggaattatattttatttgatgatattcattcctgtag

Basic information

species Glycine max
transcript GLYMA13G44420.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44420.2 (Glycine max), 5'ss of exon 20
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 19
GATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAGgtttggggaatgtgcaaaattagtcttccaactaccttctctaatcatataattgggaatgggaattatattttatttgatgatattcattcctgtag
||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| | || ||||| |||||||| ||||| |||||||| | |||||||||      |||    |   | | | ||   |      |   | ||    | ||    |      ||  |   || | |                    
GATCTATACAAATTCCGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCATTTTCTTTGGAAGTGGCAGCGCAATGATCGTAATTCGAGTGGCAAGgtacaaataatcca-agcctcaattttaggaaatgagttgttgatatcttcataataataatagatgcttccttgtgtag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325091|gb|FK019052.1|FK019052
EST:     TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAG                         GCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTG
genomic: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAGgtttggggaa ... attcctgtagGCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTG
EST: gi|17964569|gb|BM271302.1|BM271302
EST:     TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAG                         GCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTG
genomic: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAGgtttggggaa ... attcctgtagGCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTG
EST: gi|193420419|gb|FK390006.1|FK390006
EST:     TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAG                         GCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTG
genomic: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAGgtttggggaa ... attcctgtagGCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTG