1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaatttgtttatgccttttattcttattctcttgcattaaatttcttccttgcatttcagtctcattcttgaagattttaaaggaacataaaga...
species | Glycine max |
transcript | GLYMA12G37100.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGACAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGEST: gi|14011037|gb|BG725959.1|BG725959
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAG
EST: CAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|13312451|gb|BG406102.1|BG406102
genomic: CAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|9564156|gb|BE473665.1|BE473665
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|58018015|gb|CX704757.1|CX704757
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGA-TGAGGGAACTGCTTCTAGAAGATCAAAATGEST: gi|18038693|gb|BM306987.1|BM306987
genomic: GGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGA-GGAACTGCTTCTAGAAGATCAAAATG
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|209705823|gb|BW675928.1|BW675928
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|151401960|gb|EV271773.1|EV271773
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|58021278|gb|CX708020.1|CX708020
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|51336285|gb|CO980151.1|CO980151
genomic: GGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|58024379|gb|CX711120.1|CX711120
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTEST: gi|254322389|gb|GR837803.1|GR837803
genomic: GGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
EST: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAG TGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
genomic: GTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaat ... ctgtgattagTGCTCAAAGCACAGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGgttcagaaatttgtttatgccttttattcttattctcttgcattaaatttcttccttgcatttcagtctcattcttgaagattttaaaggaacataaaga
- - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - ATGCTG