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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAGCGGGCTTTAAGAATTGCAAATGCAGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaacgtccataatcttatgtcagcactgttcttctttgcttcgcaacagtgtaaaatggaataatgatgatgtgtgtattttttttctag

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 21
TTAAGCGGGCTTTAAGAATTGCAAATGCAGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaag-attaacgtccataatcttatgtcagcactgttcttctttgcttcgcaacagtgtaaaatggaataatgatgatgtgtgtatttttt--ttctag
| ||||| |||||||||||||||||||| || ||||||||||||||||   |||| || ||||  ||||| |  | ||||||  |||| || ||||||||||||  | |  |   | |||||| |    ||  |   | || || | | |   |   |      |  ||| |  |     || | |  || |  ||  ||
TGAAGCGTGCTTTAAGAATTGCAAATGCTGCTCAACAAATGGCAAATGTGACACGGGGAAGCAGTGGATCTGCCACGCTCTTTGTTGAAATTTTGAACAAgtaaatagttgcacacctaatctaactgaagttcctctttttttagttactgcaggtttcgccttttaattacaaaagattgagaaacttgtactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253912|gb|BE821727.1|BE821727
EST:     GCANNAGGTAGCANCGGATCAGTAATGCNNTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAANNNTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|254331690|gb|GR843540.1|GR843540
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|11411507|gb|BF423518.1|BF423518
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|31464944|gb|CD406972.1|CD406972
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|7327057|gb|AW620855.1|AW620855
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|14011053|gb|BG725975.1|BG725975
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACC
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACC
EST: gi|15287609|gb|BI471500.1|BI471500
EST:     ACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: ACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|151396647|gb|EV265275.1|EV265275
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT