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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttttgttctgtcttgtaaag

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||||| ||||||||||||||||| || || || || |||||||||||||| || || ||||| |||||||| ||   |  |  ||  |  |  | |||  |  ||    | | || |||  ||| || |          | ||| ||  |||   ||   | |          
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactactcctgatg--ttgatatgtgcgaag----caattttgtc--cttaacgtggcgcaccttaatatcgttctttacattcaacag----------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||||| ||||||||||||||||| || || || || |||||||||||||| || || ||||| |||||||| ||   |     ||  |  |  | |||  |  ||    | | || |||  ||| || |          | ||| ||  |||   ||   | |          
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactacacctgatg--ttgatatgtgcgaag----caattttgtc--cttaacgtggcgcaccttaatatcgttctttacattcaacag----------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 7
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgactttttttt--ttcaattattgtaattttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| || || ||||||||||||||  | ||  ||||||||||||| || | ||||  ||      |||     |||   ||| | | ||    ||| || |||| |     | |||      | | |||| ||    ||        ||
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctgacagcagaatg---cct---ttctcaaatt---ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgactttttttt--ttcaattattgtaattttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| || || ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| | |    || | | ||    ||| || |||| |     | |||      | | |||| ||    ||        ||
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atgcctt----tctcaaatt---ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttt-tgttctgtcttgtaaag------------------
| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| || || ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| | |    |||  | || || ||  |  ||     |     |    ||   ||| |||   | |  |   |   |                   
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atgccttt--ctcaa-attttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttt--tttttcaattattgtaattttttttgttctgtcttgtaaag
||||||| ||  | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| || || ||||||||||||||  | || |||||||||||||| ||  |  |  |      ||    ||  | | || |  |         |  |  | || |     |  ||   ||||  |||   |||  | | | ||  | ||
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatatt-catag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 6
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| |  || ||||||||||||||  | ||  ||||||||||||| || | |||| ||| | || | | ||| | |    |||  | || || ||  |  ||     |     |    ||   ||| |||   |    |        
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGACCTTTACTTTTTCTTGGGATCTTATCTGAGCTCCAGgtaatt-tctcttgttg-acagcgga-atgccttt--ctcaa-attttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaacag------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttttgttctgtcttgtaaag
||||||| |||||||||||||| ||||| || ||||| |||||||| ||||| || ||||||||| ||||||||||||||||  |||| ||||||||||||||||||||| | ||   |||   ||| |||| | | ||      ||   |   ||   | | |||| | | || |     |  ||||    | |          
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgtatttcttt-taataaaagaaaaaac-tgactttaatt------ttaagcattttttgtatattttcttatttttcaccttcattttgagacag----------