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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGATAGAGAGTTTGgtactcatccaaaatttgtatttttttgatatgagatcatgattctctgttagcaaattatttgtcatcttctcagatgttattttcccagaaatatttg...

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 20
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 20
CGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGATAGAGAGTTTGgtactcatcc------aaaatttgtatttttttgatatgagatcatga-ttctctgttagcaaattatttgtcatcttctcagatgttattttcccagaaatat--ttg-------------------------------------------------------------------------------------------
 ||  |  | |||| |||||||||||  || |||||||| || ||||||||||||||||||||||| || || || ||||||||||||||||||  | |||||||           |    ||| | ||  |   ||| |  |||| | ||| |     | | |   ||| | ||       |   || || | |    || ||  |||                                                                                           
TGCTTCTGCTGGGGCTCAGTATGACAGAGAATTTATTGTTTGTTCTCTTGATTTGCTTTCTGGACTTGCTGAAGGGCTTGGCAGTGGGATAGAGTCTCTGgtacttcctttttttgatgtcttgcacttactatttattac-tcataagttcaccaactgaataaattttataattgctctggccattgttgttcgtataacatgattgagttgatggttatgtgtctaatttatggaggataacacaattgagttgatttcctaaaccagatatattcttattttatcgctctatgcag

upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 20
CGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGATAGAGAGTTTGgtactca------tccaaaatttgtatttttt----tgatatgagatcatgattctctgttagcaaattatttgtcatcttctcagatgttattttcccagaaatatttg
 ||  |  | || ||||||||||| || |||||||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||||||||||||| |        |||| ||||| |   | |     | | || |||  | |  | | | | | ||||      || |||  | ||| | |||||||   |    ||    
TGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccacaatttttggatctggaagttacattagacaaggtgtttttatgaacaaa-----agttatccgc-cagttcttatttttgaaattgta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327364|gb|FK019581.1|FK019581
EST:     ATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGATAGAGAGTTTG                         GTTGCACAATGTTCTTTGAGGGACC
genomic: ATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGATAGAGAGTTTGgtactcatcc ... tatttggcagGTTGCACAATGTTCTTTGAGGGACC