Sequence
atgc intronic sequence ATGC exonic sequenceGGACTGTTGTTGATACCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttctttcctcccttctatatcaggatttattgttataattacaaatgagaattggttatgggaaagaaaattgtcatagttcaaaac...
Basic information
species | Glycine max |
transcript | GLYMA10G38770.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 19
GGACTGTTGTTGATACCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttctttcctcccttctatatcaggatttattg---ttataattaca--aatgagaattggttatgggaaagaaaattgtcatagttcaaaac
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GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaaga-atattgtagtggtccttttgtaaggctgacatatactgaacttgtcgttactctggtccccatgtcttctgtgattaagtatttgaggagactt----
upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 20
lower sequence: AC189879.3_FGT003 (Zea mays), 5'ss of exon 18
GGACTGTTGTTGATACCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttctttcctcccttctatatcaggatttattgttataattacaaatgagaattggttatgggaaagaa--aattgtcatagttcaaaac---
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GAACTGTTGTTGATTCTAAGATATGCCACCCAACAGAGTTTGATTTCTACCTCTGTAGTCATGCTGGAATCCAGgtaagag-tgatgtggtagactgaaatttgtg--gaatcctgacattacatttt--agttggaatattctaccgtactgaacctgtcattttagttggtcatatg
upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
GGACTGTTGTTGATACCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttctttcctcccttctatatcaggatttattgttataattac--aaatgagaattggttatgggaaagaaaattgtcatagttcaaaac
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GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19937592|gb|BQ081352.1|BQ081352EST: GCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAG GGTACTAGTCGGCCAGCTCATTATCATGTCCTGTGGGATGAA
genomic: GCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagata ... tatcattcagGGTACTAGTCGGCCAGCTCATTATCATGTCCTGTGGGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACTGTTGTTGATACCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttctttcctcccttctatatcaggatttattgttataattacaaatgagaattggttatgggaaagaaaattgtcatagttcaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaagaa