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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggcatttgtttgtttgtccaccttgtcgctttcaaagaagttgaatccatcttggaaatctaggcgtaaaattaaattcattgctatcttttttctttttctttttcttttttacag

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 20
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 20
GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggcatttgtttgtttgtccaccttgtcgctttcaaagaagttgaatccatcttggaaatctaggcgtaaaattaaattcattgctatcttttttctttttctttttcttttttacag
|| ||||||||||| | ||| || ||||||||||||||||| || || || || || || || |||| ||||||||| |||||| | |   | || |||      ||| |    || ||  || ||  ||   | ||  |  | |||    | | |       ||  |  |    |  |||    || ||  ||       
GTTGATGGAAGTGTTGCATCCAAGCAAGGTGTTCGGTTTGTGTTCACGGATGGATCCAGAATCATATTTCGTTTATCCgtatgttgta---gattcttt------ctttttttctttaatcaaattccat--gttttatatgtatagagacacattggcccctatcacagtgaactaacttagaattctttgttccag---

upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 20
GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggcatttgtttgtttgtccaccttgtcgctttcaaagaagttgaatccatcttggaaatctaggcgtaaaattaaattcattgctatcttttttctttttctttttcttttttacag
|| ||||||||||||| |||||| ||||||||||| ||||||||||| || || |||||||| |||||||||||||||||| |   ||||  |     | |  |   | || |||  |           | | ||||||  ||| |    || || |    |    |  |          | ||   | || | |||||||
GTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGATGGATCAAGGATCATATATCGTTTATCAgtaggcatcattaatcaacctattta---tatctcttcta-----------ttcctcttggggatcca--tttacaactgtggtggaagtaac---------tattgggtctcatatttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495856|gb|EH224023.1|EH224023
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|4260048|gb|AI416544.1|AI416544
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|57574855|gb|CX547830.1|CX547830
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|120494277|gb|EH222444.1|EH222444
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|58020248|gb|CX706990.1|CX706990
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|192333011|gb|FK024660.1|FK024660
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|120494776|gb|EH222943.1|EH222943
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|4259997|gb|AI416493.1|AI416493
EST:     TGTTCGGTTTG-TTTTACAGACGGGTCAAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTNAGAGTGTACATTGAACAGTTTGAA
genomic: TGTTCGGTTTGTTTTTACAGACGGTTC-AAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|31310494|gb|CD395697.1|CD395697
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|58015952|gb|CX702694.1|CX702694
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTCCATTGACCAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|120494261|gb|EH222428.1|EH222428
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACCTTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
EST: gi|10231645|gb|BE800533.1|BE800533
EST:     GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA                         GGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA
genomic: GTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAgtatgtggca ... ttttttacagGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAA