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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtacttgtcaacgcttgctgaatatgttttctcatgtcatgtttccaacttcaagttctttaactgtttgaatcgaagtcacatcatcatcactaatattcaattcaccttttttagtagttatattttaaattatgcctgctctattgcttgtacag

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303192|gb|FG997768.1|FG997768
EST:     TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTGGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|192334522|gb|FK024481.1|FK024481
EST:     AAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: AAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|298183650|gb|HO028863.1|HO028863
EST:     TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|207807592|gb|GD776611.1|GD776611
EST:     TGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATC
genomic: TGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAA-GAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATC
EST: gi|192334521|gb|FK024480.1|FK024480
EST:     TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|192301842|gb|FG997700.1|FG997700
EST:     TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTGGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|120493752|gb|EH221919.1|EH221919
EST:     TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: TTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|208086974|gb|GD883340.1|GD883340
EST:     AAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: AAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|208275482|gb|GE078186.1|GE078186
EST:     AAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: AAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
EST: gi|192303193|gb|FG997769.1|FG997769
EST:     AAGCTACTGCCTGGACCTCATTGGGAAATGAAGAGG                         GGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC
genomic: AAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtactt ... gcttgtacagGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGgttagtacttgtcaacgcttgctgaatatgttttctcatgtcatgtttccaacttcaagttctttaactgtttgaatcgaagtcacatcatcatcactaatattcaattcaccttttttagtagttatattttaaattatgcctgctctattgcttgtacag

- - - - TTGAAG
- - - -  TGAAGA
- - - - -  AAGAAA
- - - - - - - - -  TTGAAG
- - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG