1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
AACACGAAGAGATGAGGAAATGGCTCCTTTTATTTCAAATGCAAAGCGGAATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattcttttttagagtttttctttaatgtttggagctgtatttttcagttaaatcatttctatcacttcctttcttttactgctaatgatagagtgctcttattttcttattag
species | Glycine max |
transcript | GLYMA10G35190.2 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTEST: gi|26058666|gb|CA801580.1|CA801580
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTEST: gi|17963254|gb|BM270005.1|BM270005
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTTAAG GCTTTGGCAGATATGAAATCCATAAATCTTTTTGGCGTTCAACAAATTTGTEST: gi|51342395|gb|CO983470.1|CO983470
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: ATTATATATTTGGTGGAANNNGTGGGGTTGCAGCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTEST: gi|15812288|gb|BI784563.1|BI784563
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTEST: gi|51337373|gb|CO981239.1|CO981239
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTEST: gi|254341252|gb|GR854980.1|GR854980
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: GCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTEST: gi|13789586|gb|BG652177.1|BG652177
genomic: GCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACACGAAGAGATGAGGAAATGGCTCCTTTTATTTCAAATGCAAAGCGGAATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattcttttttagagtttttctttaatgtttggagctgtatttttcagttaaatcatttctatcacttcctttcttttactgctaatgatagagtgctcttattttcttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA