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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctcttgaattttttttaacctttcaaattttatattgtggtatcttttgatgacgatattatataaaatgctgcag

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 20
GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaatt----ctcttgaatttttttt-----------------aacctttcaaattttatattgtggtatct--tttgatgacgatatt-----atataaaatgctgcag
||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||     || |||   | | | |                 ||| |||   ||||| | || || | ||    || |||    | ||     |  |  ||  || |||
GTGCAAAATCTGGTTGCTGAAATTGTTGACTCAAAATTGGGCAAACAAgtaatctttccttttgctctctctctctgtgtttccttgtctgaacatttgtgattttgtcttttgttttccaacttaatggtattttttgcccacttggaaccctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889881|gb|BQ743094.1|BQ743094
EST:     GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA                         ATTAGTAGAATCAGGCCATCAGTGACCTCCATTGCAGCAGAGGAAATAATG
genomic: GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctct ... aatgctgcagATTAGTAGAATCAGGCCATCAGTGACCTCCATTGCAGCAGAGGAAATAATG
EST: gi|6916400|gb|AW397930.1|AW397930
EST:     GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA                         ATTAGTAGAATCAGGCCATCAGTGACCTCCATTGCAGCAGAGGAAATAATG
genomic: GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctct ... aatgctgcagATTAGTAGAATCAGGCCATCAGTGACCTCCATTGCAGCAGAGGAAATAATG
EST: gi|58023689|gb|CX710430.1|CX710430
EST:     GCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA                         ATTAGTAGAATCAGGCCATCAGTGACCTCCATTGCAGCAGAGGAAATAATG
genomic: GCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctct ... aatgctgcagATTAGTAGAATCAGGCCATCAGTGACCTCCATTGCAGCAGAGGAAATAATG