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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatcactttctaaaatcttttaactttgaattatttattattttcatcattctgtttcattggaccctttttccagtagtttaataattacatttgctgacttacatgtgaaacag

Basic information

species Glycine max
transcript GLYMA09G02490.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.2 (Glycine max), 5'ss of exon 20
lower sequence: Vv10s0116g00930.t01 (Vitis vinifera), 5'ss of exon 7
GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatcactttctaaaatcttttaactttgaattatttattattttcatcattctgtttcattgga--ccctttttccagtagtttaataattacatttgct---gacttacatgtgaaacag----------
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GAGGCTCACAAGCAAAGTAGCAACTGGTTACCTCCTCCATGGGCAATTGTTGCAATGGTTGTCCTTGGCTTCAATGAGTTTATGCTCCTTCTAAAgtaagt-taagcacatcaagagtataaatatcattattttcatgagtctcatgttattagtaacttggaagttcttatttcactgttcttatttttttccttacctccaatttaactattttgctcttctgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7926591|gb|AW832617.1|AW832617
EST:     ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA                         AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC