Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatcactttctaaaatcttttaactttgaattatttattattttcatcattctgtttcattggaccctttttccagtagtttaataattacatttgctgacttacatgtgaaacag

Basic information

species Glycine max
transcript GLYMA09G02490.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.2 (Glycine max), 5'ss of exon 20
lower sequence: Vv10s0116g00930.t01 (Vitis vinifera), 5'ss of exon 7
GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatcactttctaaaatcttttaactttgaattatttattattttcatcattctgtttcattgga--ccctttttccagtagtttaataattacatttgct---gacttacatgtgaaacag----------
|||||  ||||||  |||| ||| |||||||||||||||||||||||  | ||||||||  | ||||| || ||||| |||||| | || ||||||||  | | |     | ||   | | ||  |     | || || | | ||||  |  |  |   |||||    ||| || || |  | | ||  ||    || |     | |||  | |    |            
GAGGCTCACAAGCAAAGTAGCAACTGGTTACCTCCTCCATGGGCAATTGTTGCAATGGTTGTCCTTGGCTTCAATGAGTTTATGCTCCTTCTAAAgtaagt-taagcacatcaagagtataaatatcattattttcatgagtctcatgttattagtaacttggaagttcttatttcactgttcttatttttttccttacctccaatttaactattttgctcttctgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31310262|gb|CD395465.1|CD395465
EST:     TTTATGATGCTACTAAA                         AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: TTTATGATGCTACTAAAgtacatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: gi|42722413|gb|CK768315.1|CK768315
EST:     ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA                         AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: gi|51335026|gb|CO978892.1|CO978892
EST:     ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA                         AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: gi|21676612|gb|BQ628963.1|BQ628963
EST:     ATGCTACTAAA                         AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: ATGCTACTAAAgtacatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: gi|7147557|gb|AW509479.1|AW509479
EST:     ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA                         AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAAgtacatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC