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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGAGTATTTTGAATCAAAAGCCCTAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTGAGgtactaaacatggtatcccccatttactgtgtttcaaacaggttgtatttcagggtatatatatatttaacctctttcatgcag

Basic information

species Glycine max
transcript GLYMA08G22850.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 20
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 19
GGCTTGAGTATTTTGAATCAAAAGCCCTAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTGAGgtactaaacatggtatcccccatttactgtgtttcaaacaggttgtatttcagggtatatatatatttaacctctttcatgcag
|||| || ||||||||||||| |||| |||||||||| |||||||    ||||||||  |||||||||||||| ||||| || || ||||| ||||| |||||||||| |||| | | || |       |     | |  |    |||||||  |   |   |  |   |||| | || |||||
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaa-atggaaactcctagaacacataaaggatatggtaattatttcattg-gcaccaaagtccgacct-tctcttgcag

upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 21
GGCTTGAGTATTTTGAATCAAAAGCCCTAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTGAGgtactaaacatggtatcccccatttactgtgtttcaa-acaggttg--tatttcagggtatat--atatatttaacctctttcatgcag
||||||| |||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| | |  ||||||| |||   |||||  ||||  |  | |  ||  ||||||  || |     | |  ||| |||  |||  |||||
GGCTTGAATATTTTGAATCAAAAGCTTTAGAGCAGCAAGAAGCAGCAAGAAATGGAACTCCAAAGCCAGATGCATCTATTGCAAGCAAAGGCCACCTTAGgtattga-tatggtattcccatattacttggtttttatgctgtgtgactatttcttggaactccaaaacctttgaccctttttttgcag