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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCAgtaagtcaacttacaattagaaagcctacattgttaaatgggtttgcatgattttgttcgtttgagctaacacgtatgctttccaaacag

Basic information

species Glycine max
transcript GLYMA08G21540.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 20
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
ACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCAgtaagtcaa--cttacaattagaaagcctacattgttaaatgggtttgcatgattttgttcgtttgagctaacacgtatg-ctttccaaacag
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ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatata-tcaaaattcttc--tgagatggtgaagttttgggc-tttgagctgacatatatggctatatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731165|gb|BU763691.1|BU763691
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCAgtaagtcaac ... ttccaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC