Sequence
atgc intronic sequence ATGC exonic sequenceTATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttattttattcatttttctgattttgacaaattatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt...
Basic information
species | Glycine max |
transcript | GLYMA07G06160.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 20
lower sequence: AT1G01320.2 (Arabidopsis thaliana), 5'ss of exon 20
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttatttt--attcatttttctgattttgacaa----attatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt
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CATGATGGAGGAAGGTCTAGGAAATGTGCATGTTGCCTTGAGGTATCTTCACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAGgttcttttcccgatgctcgttttttgttttgggaacataaatatgtaagaaacttgatttgat--tttgctaattatgtcaaatttcag-----------------
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 20
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttattttattcatttttctgattttgacaaattatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt------
||||||||| ||||| || ||| |||| ||||| || ||| |||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||| |||| |||| | | ||| | |||| |||| || | || | ||| | || | | |||| |||| |
TATGATGGAGGAAGGCCTTGGACATGTGCATGTGGCCCTCAGATATCTTCATAAAGCTCTAAAGTGCAACCAAAAGTTACTTGGTCCAGATCATATTCAGgttcctccctattttagcttcttcctgtcttttatttttttgtttatttt------ttttccatttataatatagtcttttgatttatagttgatgacggaatgaa
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 20
lower sequence: EFJ26424 (Selaginella moellendorffii), 5'ss of exon 19
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttattttattcatttttctgattttgacaaattatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt
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AATGATGGAAGAAGGTCTAGGGAATGTGCATATAGCGCTTAGATATCTTCACGAAGCTTTGAAATGCAACCAGCGACTTTTAGGAGCGGACCACATCCAGgtaa-agattggggaacgtttaaactgttctgagttctaa--ttttttggattttag-------------------------------------------
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 20
lower sequence: EFJ26734 (Selaginella moellendorffii), 5'ss of exon 19
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttattttattcatttttctgattttgacaaattatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt
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AATGATGGAAGAAGGTCTAGGGAATGTGCATATAGCGCTTAGATATCTTCACGAAGCTTTGAAATGCAACCAGCGACTTTTAGGAGCGGACCACATCCAGgtaa-agattggggaacttttaaactgttctgagttct--agttttttggattttag-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9987721|gb|BE661829.1|BE661829EST: ACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAG ACAGCTGCAAGTTATCATGCAATAGCAATAGCACTTTCATTGATGGAAGCA
genomic: ACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttatttt ... tcctctgcagACAGCTGCAAGTTATCATGCAATAGCAATAGCACTTTCATTGATGGAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttattttattcatttttctgattttgacaaattatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA